Interface OmicsClient
- All Superinterfaces:
AutoCloseable,AwsClient,SdkAutoCloseable,SdkClient
builder() method.
Amazon Web Services HealthOmics is a service that helps users such as bioinformaticians, researchers, and scientists to store, query, analyze, and generate insights from genomics and other biological data. It simplifies and accelerates the process of storing and analyzing genomic information for Amazon Web Services.
For an introduction to the service, see What is Amazon Web Services HealthOmics? in the Amazon Web Services HealthOmics User Guide.
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Field Summary
FieldsModifier and TypeFieldDescriptionstatic final StringValue for looking up the service's metadata from theServiceMetadataProvider.static final String -
Method Summary
Modifier and TypeMethodDescriptionabortMultipartReadSetUpload(Consumer<AbortMultipartReadSetUploadRequest.Builder> abortMultipartReadSetUploadRequest) Stops a multipart read set upload into a sequence store and returns a response with no body if the operation is successful.abortMultipartReadSetUpload(AbortMultipartReadSetUploadRequest abortMultipartReadSetUploadRequest) Stops a multipart read set upload into a sequence store and returns a response with no body if the operation is successful.default AcceptShareResponseacceptShare(Consumer<AcceptShareRequest.Builder> acceptShareRequest) Accept a resource share request.default AcceptShareResponseacceptShare(AcceptShareRequest acceptShareRequest) Accept a resource share request.default BatchDeleteReadSetResponsebatchDeleteReadSet(Consumer<BatchDeleteReadSetRequest.Builder> batchDeleteReadSetRequest) Deletes one or more read sets.default BatchDeleteReadSetResponsebatchDeleteReadSet(BatchDeleteReadSetRequest batchDeleteReadSetRequest) Deletes one or more read sets.static OmicsClientBuilderbuilder()Create a builder that can be used to configure and create aOmicsClient.cancelAnnotationImportJob(Consumer<CancelAnnotationImportJobRequest.Builder> cancelAnnotationImportJobRequest) Cancels an annotation import job.cancelAnnotationImportJob(CancelAnnotationImportJobRequest cancelAnnotationImportJobRequest) Cancels an annotation import job.default CancelRunResponsecancelRun(Consumer<CancelRunRequest.Builder> cancelRunRequest) Cancels a run using its ID and returns a response with no body if the operation is successful.default CancelRunResponsecancelRun(CancelRunRequest cancelRunRequest) Cancels a run using its ID and returns a response with no body if the operation is successful.default CancelVariantImportJobResponsecancelVariantImportJob(Consumer<CancelVariantImportJobRequest.Builder> cancelVariantImportJobRequest) Cancels a variant import job.default CancelVariantImportJobResponsecancelVariantImportJob(CancelVariantImportJobRequest cancelVariantImportJobRequest) Cancels a variant import job.completeMultipartReadSetUpload(Consumer<CompleteMultipartReadSetUploadRequest.Builder> completeMultipartReadSetUploadRequest) Completes a multipart read set upload into a sequence store after you have initiated the upload process withCreateMultipartReadSetUploadand uploaded all read set parts usingUploadReadSetPart.completeMultipartReadSetUpload(CompleteMultipartReadSetUploadRequest completeMultipartReadSetUploadRequest) Completes a multipart read set upload into a sequence store after you have initiated the upload process withCreateMultipartReadSetUploadand uploaded all read set parts usingUploadReadSetPart.static OmicsClientcreate()Create aOmicsClientwith the region loaded from theDefaultAwsRegionProviderChainand credentials loaded from theDefaultCredentialsProvider.default CreateAnnotationStoreResponsecreateAnnotationStore(Consumer<CreateAnnotationStoreRequest.Builder> createAnnotationStoreRequest) Creates an annotation store.default CreateAnnotationStoreResponsecreateAnnotationStore(CreateAnnotationStoreRequest createAnnotationStoreRequest) Creates an annotation store.createAnnotationStoreVersion(Consumer<CreateAnnotationStoreVersionRequest.Builder> createAnnotationStoreVersionRequest) Creates a new version of an annotation store.createAnnotationStoreVersion(CreateAnnotationStoreVersionRequest createAnnotationStoreVersionRequest) Creates a new version of an annotation store.createMultipartReadSetUpload(Consumer<CreateMultipartReadSetUploadRequest.Builder> createMultipartReadSetUploadRequest) Initiates a multipart read set upload for uploading partitioned source files into a sequence store.createMultipartReadSetUpload(CreateMultipartReadSetUploadRequest createMultipartReadSetUploadRequest) Initiates a multipart read set upload for uploading partitioned source files into a sequence store.default CreateReferenceStoreResponsecreateReferenceStore(Consumer<CreateReferenceStoreRequest.Builder> createReferenceStoreRequest) Creates a reference store and returns metadata in JSON format.default CreateReferenceStoreResponsecreateReferenceStore(CreateReferenceStoreRequest createReferenceStoreRequest) Creates a reference store and returns metadata in JSON format.default CreateRunCacheResponsecreateRunCache(Consumer<CreateRunCacheRequest.Builder> createRunCacheRequest) Creates a run cache to store and reference task outputs from completed private runs.default CreateRunCacheResponsecreateRunCache(CreateRunCacheRequest createRunCacheRequest) Creates a run cache to store and reference task outputs from completed private runs.default CreateRunGroupResponsecreateRunGroup(Consumer<CreateRunGroupRequest.Builder> createRunGroupRequest) Creates a run group to limit the compute resources for the runs that are added to the group.default CreateRunGroupResponsecreateRunGroup(CreateRunGroupRequest createRunGroupRequest) Creates a run group to limit the compute resources for the runs that are added to the group.default CreateSequenceStoreResponsecreateSequenceStore(Consumer<CreateSequenceStoreRequest.Builder> createSequenceStoreRequest) Creates a sequence store and returns its metadata.default CreateSequenceStoreResponsecreateSequenceStore(CreateSequenceStoreRequest createSequenceStoreRequest) Creates a sequence store and returns its metadata.default CreateShareResponsecreateShare(Consumer<CreateShareRequest.Builder> createShareRequest) Creates a cross-account shared resource.default CreateShareResponsecreateShare(CreateShareRequest createShareRequest) Creates a cross-account shared resource.default CreateVariantStoreResponsecreateVariantStore(Consumer<CreateVariantStoreRequest.Builder> createVariantStoreRequest) Creates a variant store.default CreateVariantStoreResponsecreateVariantStore(CreateVariantStoreRequest createVariantStoreRequest) Creates a variant store.default CreateWorkflowResponsecreateWorkflow(Consumer<CreateWorkflowRequest.Builder> createWorkflowRequest) Creates a private workflow.default CreateWorkflowResponsecreateWorkflow(CreateWorkflowRequest createWorkflowRequest) Creates a private workflow.default CreateWorkflowVersionResponsecreateWorkflowVersion(Consumer<CreateWorkflowVersionRequest.Builder> createWorkflowVersionRequest) Creates a new workflow version for the workflow that you specify with theworkflowIdparameter.default CreateWorkflowVersionResponsecreateWorkflowVersion(CreateWorkflowVersionRequest createWorkflowVersionRequest) Creates a new workflow version for the workflow that you specify with theworkflowIdparameter.default DeleteAnnotationStoreResponsedeleteAnnotationStore(Consumer<DeleteAnnotationStoreRequest.Builder> deleteAnnotationStoreRequest) Deletes an annotation store.default DeleteAnnotationStoreResponsedeleteAnnotationStore(DeleteAnnotationStoreRequest deleteAnnotationStoreRequest) Deletes an annotation store.deleteAnnotationStoreVersions(Consumer<DeleteAnnotationStoreVersionsRequest.Builder> deleteAnnotationStoreVersionsRequest) Deletes one or multiple versions of an annotation store.deleteAnnotationStoreVersions(DeleteAnnotationStoreVersionsRequest deleteAnnotationStoreVersionsRequest) Deletes one or multiple versions of an annotation store.default DeleteReferenceResponsedeleteReference(Consumer<DeleteReferenceRequest.Builder> deleteReferenceRequest) Deletes a reference genome and returns a response with no body if the operation is successful.default DeleteReferenceResponsedeleteReference(DeleteReferenceRequest deleteReferenceRequest) Deletes a reference genome and returns a response with no body if the operation is successful.default DeleteReferenceStoreResponsedeleteReferenceStore(Consumer<DeleteReferenceStoreRequest.Builder> deleteReferenceStoreRequest) Deletes a reference store and returns a response with no body if the operation is successful.default DeleteReferenceStoreResponsedeleteReferenceStore(DeleteReferenceStoreRequest deleteReferenceStoreRequest) Deletes a reference store and returns a response with no body if the operation is successful.default DeleteRunResponsedeleteRun(Consumer<DeleteRunRequest.Builder> deleteRunRequest) Deletes a run and returns a response with no body if the operation is successful.default DeleteRunResponsedeleteRun(DeleteRunRequest deleteRunRequest) Deletes a run and returns a response with no body if the operation is successful.default DeleteRunCacheResponsedeleteRunCache(Consumer<DeleteRunCacheRequest.Builder> deleteRunCacheRequest) Deletes a run cache and returns a response with no body if the operation is successful.default DeleteRunCacheResponsedeleteRunCache(DeleteRunCacheRequest deleteRunCacheRequest) Deletes a run cache and returns a response with no body if the operation is successful.default DeleteRunGroupResponsedeleteRunGroup(Consumer<DeleteRunGroupRequest.Builder> deleteRunGroupRequest) Deletes a run group and returns a response with no body if the operation is successful.default DeleteRunGroupResponsedeleteRunGroup(DeleteRunGroupRequest deleteRunGroupRequest) Deletes a run group and returns a response with no body if the operation is successful.default DeleteS3AccessPolicyResponsedeleteS3AccessPolicy(Consumer<DeleteS3AccessPolicyRequest.Builder> deleteS3AccessPolicyRequest) Deletes an access policy for the specified store.default DeleteS3AccessPolicyResponsedeleteS3AccessPolicy(DeleteS3AccessPolicyRequest deleteS3AccessPolicyRequest) Deletes an access policy for the specified store.default DeleteSequenceStoreResponsedeleteSequenceStore(Consumer<DeleteSequenceStoreRequest.Builder> deleteSequenceStoreRequest) Deletes a sequence store and returns a response with no body if the operation is successful.default DeleteSequenceStoreResponsedeleteSequenceStore(DeleteSequenceStoreRequest deleteSequenceStoreRequest) Deletes a sequence store and returns a response with no body if the operation is successful.default DeleteShareResponsedeleteShare(Consumer<DeleteShareRequest.Builder> deleteShareRequest) Deletes a resource share.default DeleteShareResponsedeleteShare(DeleteShareRequest deleteShareRequest) Deletes a resource share.default DeleteVariantStoreResponsedeleteVariantStore(Consumer<DeleteVariantStoreRequest.Builder> deleteVariantStoreRequest) Deletes a variant store.default DeleteVariantStoreResponsedeleteVariantStore(DeleteVariantStoreRequest deleteVariantStoreRequest) Deletes a variant store.default DeleteWorkflowResponsedeleteWorkflow(Consumer<DeleteWorkflowRequest.Builder> deleteWorkflowRequest) Deletes a workflow by specifying its ID.default DeleteWorkflowResponsedeleteWorkflow(DeleteWorkflowRequest deleteWorkflowRequest) Deletes a workflow by specifying its ID.default DeleteWorkflowVersionResponsedeleteWorkflowVersion(Consumer<DeleteWorkflowVersionRequest.Builder> deleteWorkflowVersionRequest) Deletes a workflow version.default DeleteWorkflowVersionResponsedeleteWorkflowVersion(DeleteWorkflowVersionRequest deleteWorkflowVersionRequest) Deletes a workflow version.default GetAnnotationImportJobResponsegetAnnotationImportJob(Consumer<GetAnnotationImportJobRequest.Builder> getAnnotationImportJobRequest) Gets information about an annotation import job.default GetAnnotationImportJobResponsegetAnnotationImportJob(GetAnnotationImportJobRequest getAnnotationImportJobRequest) Gets information about an annotation import job.default GetAnnotationStoreResponsegetAnnotationStore(Consumer<GetAnnotationStoreRequest.Builder> getAnnotationStoreRequest) Gets information about an annotation store.default GetAnnotationStoreResponsegetAnnotationStore(GetAnnotationStoreRequest getAnnotationStoreRequest) Gets information about an annotation store.getAnnotationStoreVersion(Consumer<GetAnnotationStoreVersionRequest.Builder> getAnnotationStoreVersionRequest) Retrieves the metadata for an annotation store version.getAnnotationStoreVersion(GetAnnotationStoreVersionRequest getAnnotationStoreVersionRequest) Retrieves the metadata for an annotation store version.default ResponseInputStream<GetReadSetResponse> getReadSet(Consumer<GetReadSetRequest.Builder> getReadSetRequest) Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.default GetReadSetResponsegetReadSet(Consumer<GetReadSetRequest.Builder> getReadSetRequest, Path destinationPath) Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.default <ReturnT> ReturnTgetReadSet(Consumer<GetReadSetRequest.Builder> getReadSetRequest, ResponseTransformer<GetReadSetResponse, ReturnT> responseTransformer) Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.default ResponseInputStream<GetReadSetResponse> getReadSet(GetReadSetRequest getReadSetRequest) Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.default GetReadSetResponsegetReadSet(GetReadSetRequest getReadSetRequest, Path destinationPath) Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.default <ReturnT> ReturnTgetReadSet(GetReadSetRequest getReadSetRequest, ResponseTransformer<GetReadSetResponse, ReturnT> responseTransformer) Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.default GetReadSetActivationJobResponsegetReadSetActivationJob(Consumer<GetReadSetActivationJobRequest.Builder> getReadSetActivationJobRequest) Returns detailed information about the status of a read set activation job in JSON format.default GetReadSetActivationJobResponsegetReadSetActivationJob(GetReadSetActivationJobRequest getReadSetActivationJobRequest) Returns detailed information about the status of a read set activation job in JSON format.default ResponseBytes<GetReadSetResponse> getReadSetAsBytes(Consumer<GetReadSetRequest.Builder> getReadSetRequest) Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.default ResponseBytes<GetReadSetResponse> getReadSetAsBytes(GetReadSetRequest getReadSetRequest) Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.default GetReadSetExportJobResponsegetReadSetExportJob(Consumer<GetReadSetExportJobRequest.Builder> getReadSetExportJobRequest) Retrieves status information about a read set export job and returns the data in JSON format.default GetReadSetExportJobResponsegetReadSetExportJob(GetReadSetExportJobRequest getReadSetExportJobRequest) Retrieves status information about a read set export job and returns the data in JSON format.default GetReadSetImportJobResponsegetReadSetImportJob(Consumer<GetReadSetImportJobRequest.Builder> getReadSetImportJobRequest) Gets detailed and status information about a read set import job and returns the data in JSON format.default GetReadSetImportJobResponsegetReadSetImportJob(GetReadSetImportJobRequest getReadSetImportJobRequest) Gets detailed and status information about a read set import job and returns the data in JSON format.default GetReadSetMetadataResponsegetReadSetMetadata(Consumer<GetReadSetMetadataRequest.Builder> getReadSetMetadataRequest) Retrieves the metadata for a read set from a sequence store in JSON format.default GetReadSetMetadataResponsegetReadSetMetadata(GetReadSetMetadataRequest getReadSetMetadataRequest) Retrieves the metadata for a read set from a sequence store in JSON format.default ResponseInputStream<GetReferenceResponse> getReference(Consumer<GetReferenceRequest.Builder> getReferenceRequest) Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.default GetReferenceResponsegetReference(Consumer<GetReferenceRequest.Builder> getReferenceRequest, Path destinationPath) Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.default <ReturnT> ReturnTgetReference(Consumer<GetReferenceRequest.Builder> getReferenceRequest, ResponseTransformer<GetReferenceResponse, ReturnT> responseTransformer) Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.default ResponseInputStream<GetReferenceResponse> getReference(GetReferenceRequest getReferenceRequest) Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.default GetReferenceResponsegetReference(GetReferenceRequest getReferenceRequest, Path destinationPath) Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.default <ReturnT> ReturnTgetReference(GetReferenceRequest getReferenceRequest, ResponseTransformer<GetReferenceResponse, ReturnT> responseTransformer) Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.default ResponseBytes<GetReferenceResponse> getReferenceAsBytes(Consumer<GetReferenceRequest.Builder> getReferenceRequest) Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.default ResponseBytes<GetReferenceResponse> getReferenceAsBytes(GetReferenceRequest getReferenceRequest) Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.default GetReferenceImportJobResponsegetReferenceImportJob(Consumer<GetReferenceImportJobRequest.Builder> getReferenceImportJobRequest) Monitors the status of a reference import job.default GetReferenceImportJobResponsegetReferenceImportJob(GetReferenceImportJobRequest getReferenceImportJobRequest) Monitors the status of a reference import job.default GetReferenceMetadataResponsegetReferenceMetadata(Consumer<GetReferenceMetadataRequest.Builder> getReferenceMetadataRequest) Retrieves metadata for a reference genome.default GetReferenceMetadataResponsegetReferenceMetadata(GetReferenceMetadataRequest getReferenceMetadataRequest) Retrieves metadata for a reference genome.default GetReferenceStoreResponsegetReferenceStore(Consumer<GetReferenceStoreRequest.Builder> getReferenceStoreRequest) Gets information about a reference store.default GetReferenceStoreResponsegetReferenceStore(GetReferenceStoreRequest getReferenceStoreRequest) Gets information about a reference store.default GetRunResponsegetRun(Consumer<GetRunRequest.Builder> getRunRequest) Gets detailed information about a specific run using its ID.default GetRunResponsegetRun(GetRunRequest getRunRequest) Gets detailed information about a specific run using its ID.default GetRunCacheResponsegetRunCache(Consumer<GetRunCacheRequest.Builder> getRunCacheRequest) Retrieves detailed information about the specified run cache using its ID.default GetRunCacheResponsegetRunCache(GetRunCacheRequest getRunCacheRequest) Retrieves detailed information about the specified run cache using its ID.default GetRunGroupResponsegetRunGroup(Consumer<GetRunGroupRequest.Builder> getRunGroupRequest) Gets information about a run group and returns its metadata.default GetRunGroupResponsegetRunGroup(GetRunGroupRequest getRunGroupRequest) Gets information about a run group and returns its metadata.default GetRunTaskResponsegetRunTask(Consumer<GetRunTaskRequest.Builder> getRunTaskRequest) Gets detailed information about a run task using its ID.default GetRunTaskResponsegetRunTask(GetRunTaskRequest getRunTaskRequest) Gets detailed information about a run task using its ID.default GetS3AccessPolicyResponsegetS3AccessPolicy(Consumer<GetS3AccessPolicyRequest.Builder> getS3AccessPolicyRequest) Retrieves details about an access policy on a given store.default GetS3AccessPolicyResponsegetS3AccessPolicy(GetS3AccessPolicyRequest getS3AccessPolicyRequest) Retrieves details about an access policy on a given store.default GetSequenceStoreResponsegetSequenceStore(Consumer<GetSequenceStoreRequest.Builder> getSequenceStoreRequest) Retrieves metadata for a sequence store using its ID and returns it in JSON format.default GetSequenceStoreResponsegetSequenceStore(GetSequenceStoreRequest getSequenceStoreRequest) Retrieves metadata for a sequence store using its ID and returns it in JSON format.default GetShareResponsegetShare(Consumer<GetShareRequest.Builder> getShareRequest) Retrieves the metadata for the specified resource share.default GetShareResponsegetShare(GetShareRequest getShareRequest) Retrieves the metadata for the specified resource share.default GetVariantImportJobResponsegetVariantImportJob(Consumer<GetVariantImportJobRequest.Builder> getVariantImportJobRequest) Gets information about a variant import job.default GetVariantImportJobResponsegetVariantImportJob(GetVariantImportJobRequest getVariantImportJobRequest) Gets information about a variant import job.default GetVariantStoreResponsegetVariantStore(Consumer<GetVariantStoreRequest.Builder> getVariantStoreRequest) Gets information about a variant store.default GetVariantStoreResponsegetVariantStore(GetVariantStoreRequest getVariantStoreRequest) Gets information about a variant store.default GetWorkflowResponsegetWorkflow(Consumer<GetWorkflowRequest.Builder> getWorkflowRequest) Gets all information about a workflow using its ID.default GetWorkflowResponsegetWorkflow(GetWorkflowRequest getWorkflowRequest) Gets all information about a workflow using its ID.default GetWorkflowVersionResponsegetWorkflowVersion(Consumer<GetWorkflowVersionRequest.Builder> getWorkflowVersionRequest) Gets information about a workflow version.default GetWorkflowVersionResponsegetWorkflowVersion(GetWorkflowVersionRequest getWorkflowVersionRequest) Gets information about a workflow version.default ListAnnotationImportJobsResponselistAnnotationImportJobs(Consumer<ListAnnotationImportJobsRequest.Builder> listAnnotationImportJobsRequest) Retrieves a list of annotation import jobs.default ListAnnotationImportJobsResponselistAnnotationImportJobs(ListAnnotationImportJobsRequest listAnnotationImportJobsRequest) Retrieves a list of annotation import jobs.default ListAnnotationImportJobsIterablelistAnnotationImportJobsPaginator(Consumer<ListAnnotationImportJobsRequest.Builder> listAnnotationImportJobsRequest) This is a variant oflistAnnotationImportJobs(software.amazon.awssdk.services.omics.model.ListAnnotationImportJobsRequest)operation.default ListAnnotationImportJobsIterablelistAnnotationImportJobsPaginator(ListAnnotationImportJobsRequest listAnnotationImportJobsRequest) This is a variant oflistAnnotationImportJobs(software.amazon.awssdk.services.omics.model.ListAnnotationImportJobsRequest)operation.default ListAnnotationStoresResponselistAnnotationStores(Consumer<ListAnnotationStoresRequest.Builder> listAnnotationStoresRequest) Retrieves a list of annotation stores.default ListAnnotationStoresResponselistAnnotationStores(ListAnnotationStoresRequest listAnnotationStoresRequest) Retrieves a list of annotation stores.default ListAnnotationStoresIterablelistAnnotationStoresPaginator(Consumer<ListAnnotationStoresRequest.Builder> listAnnotationStoresRequest) This is a variant oflistAnnotationStores(software.amazon.awssdk.services.omics.model.ListAnnotationStoresRequest)operation.default ListAnnotationStoresIterablelistAnnotationStoresPaginator(ListAnnotationStoresRequest listAnnotationStoresRequest) This is a variant oflistAnnotationStores(software.amazon.awssdk.services.omics.model.ListAnnotationStoresRequest)operation.listAnnotationStoreVersions(Consumer<ListAnnotationStoreVersionsRequest.Builder> listAnnotationStoreVersionsRequest) Lists the versions of an annotation store.listAnnotationStoreVersions(ListAnnotationStoreVersionsRequest listAnnotationStoreVersionsRequest) Lists the versions of an annotation store.listAnnotationStoreVersionsPaginator(Consumer<ListAnnotationStoreVersionsRequest.Builder> listAnnotationStoreVersionsRequest) This is a variant oflistAnnotationStoreVersions(software.amazon.awssdk.services.omics.model.ListAnnotationStoreVersionsRequest)operation.listAnnotationStoreVersionsPaginator(ListAnnotationStoreVersionsRequest listAnnotationStoreVersionsRequest) This is a variant oflistAnnotationStoreVersions(software.amazon.awssdk.services.omics.model.ListAnnotationStoreVersionsRequest)operation.listMultipartReadSetUploads(Consumer<ListMultipartReadSetUploadsRequest.Builder> listMultipartReadSetUploadsRequest) Lists in-progress multipart read set uploads for a sequence store and returns it in a JSON formatted output.listMultipartReadSetUploads(ListMultipartReadSetUploadsRequest listMultipartReadSetUploadsRequest) Lists in-progress multipart read set uploads for a sequence store and returns it in a JSON formatted output.listMultipartReadSetUploadsPaginator(Consumer<ListMultipartReadSetUploadsRequest.Builder> listMultipartReadSetUploadsRequest) This is a variant oflistMultipartReadSetUploads(software.amazon.awssdk.services.omics.model.ListMultipartReadSetUploadsRequest)operation.listMultipartReadSetUploadsPaginator(ListMultipartReadSetUploadsRequest listMultipartReadSetUploadsRequest) This is a variant oflistMultipartReadSetUploads(software.amazon.awssdk.services.omics.model.ListMultipartReadSetUploadsRequest)operation.listReadSetActivationJobs(Consumer<ListReadSetActivationJobsRequest.Builder> listReadSetActivationJobsRequest) Retrieves a list of read set activation jobs and returns the metadata in a JSON formatted output.listReadSetActivationJobs(ListReadSetActivationJobsRequest listReadSetActivationJobsRequest) Retrieves a list of read set activation jobs and returns the metadata in a JSON formatted output.listReadSetActivationJobsPaginator(Consumer<ListReadSetActivationJobsRequest.Builder> listReadSetActivationJobsRequest) This is a variant oflistReadSetActivationJobs(software.amazon.awssdk.services.omics.model.ListReadSetActivationJobsRequest)operation.listReadSetActivationJobsPaginator(ListReadSetActivationJobsRequest listReadSetActivationJobsRequest) This is a variant oflistReadSetActivationJobs(software.amazon.awssdk.services.omics.model.ListReadSetActivationJobsRequest)operation.default ListReadSetExportJobsResponselistReadSetExportJobs(Consumer<ListReadSetExportJobsRequest.Builder> listReadSetExportJobsRequest) Retrieves a list of read set export jobs in a JSON formatted response.default ListReadSetExportJobsResponselistReadSetExportJobs(ListReadSetExportJobsRequest listReadSetExportJobsRequest) Retrieves a list of read set export jobs in a JSON formatted response.default ListReadSetExportJobsIterablelistReadSetExportJobsPaginator(Consumer<ListReadSetExportJobsRequest.Builder> listReadSetExportJobsRequest) This is a variant oflistReadSetExportJobs(software.amazon.awssdk.services.omics.model.ListReadSetExportJobsRequest)operation.default ListReadSetExportJobsIterablelistReadSetExportJobsPaginator(ListReadSetExportJobsRequest listReadSetExportJobsRequest) This is a variant oflistReadSetExportJobs(software.amazon.awssdk.services.omics.model.ListReadSetExportJobsRequest)operation.default ListReadSetImportJobsResponselistReadSetImportJobs(Consumer<ListReadSetImportJobsRequest.Builder> listReadSetImportJobsRequest) Retrieves a list of read set import jobs and returns the data in JSON format.default ListReadSetImportJobsResponselistReadSetImportJobs(ListReadSetImportJobsRequest listReadSetImportJobsRequest) Retrieves a list of read set import jobs and returns the data in JSON format.default ListReadSetImportJobsIterablelistReadSetImportJobsPaginator(Consumer<ListReadSetImportJobsRequest.Builder> listReadSetImportJobsRequest) This is a variant oflistReadSetImportJobs(software.amazon.awssdk.services.omics.model.ListReadSetImportJobsRequest)operation.default ListReadSetImportJobsIterablelistReadSetImportJobsPaginator(ListReadSetImportJobsRequest listReadSetImportJobsRequest) This is a variant oflistReadSetImportJobs(software.amazon.awssdk.services.omics.model.ListReadSetImportJobsRequest)operation.default ListReadSetsResponselistReadSets(Consumer<ListReadSetsRequest.Builder> listReadSetsRequest) Retrieves a list of read sets from a sequence store ID and returns the metadata in JSON format.default ListReadSetsResponselistReadSets(ListReadSetsRequest listReadSetsRequest) Retrieves a list of read sets from a sequence store ID and returns the metadata in JSON format.default ListReadSetsIterablelistReadSetsPaginator(Consumer<ListReadSetsRequest.Builder> listReadSetsRequest) This is a variant oflistReadSets(software.amazon.awssdk.services.omics.model.ListReadSetsRequest)operation.default ListReadSetsIterablelistReadSetsPaginator(ListReadSetsRequest listReadSetsRequest) This is a variant oflistReadSets(software.amazon.awssdk.services.omics.model.ListReadSetsRequest)operation.default ListReadSetUploadPartsResponselistReadSetUploadParts(Consumer<ListReadSetUploadPartsRequest.Builder> listReadSetUploadPartsRequest) Lists all parts in a multipart read set upload for a sequence store and returns the metadata in a JSON formatted output.default ListReadSetUploadPartsResponselistReadSetUploadParts(ListReadSetUploadPartsRequest listReadSetUploadPartsRequest) Lists all parts in a multipart read set upload for a sequence store and returns the metadata in a JSON formatted output.default ListReadSetUploadPartsIterablelistReadSetUploadPartsPaginator(Consumer<ListReadSetUploadPartsRequest.Builder> listReadSetUploadPartsRequest) This is a variant oflistReadSetUploadParts(software.amazon.awssdk.services.omics.model.ListReadSetUploadPartsRequest)operation.default ListReadSetUploadPartsIterablelistReadSetUploadPartsPaginator(ListReadSetUploadPartsRequest listReadSetUploadPartsRequest) This is a variant oflistReadSetUploadParts(software.amazon.awssdk.services.omics.model.ListReadSetUploadPartsRequest)operation.default ListReferenceImportJobsResponselistReferenceImportJobs(Consumer<ListReferenceImportJobsRequest.Builder> listReferenceImportJobsRequest) Retrieves the metadata of one or more reference import jobs for a reference store.default ListReferenceImportJobsResponselistReferenceImportJobs(ListReferenceImportJobsRequest listReferenceImportJobsRequest) Retrieves the metadata of one or more reference import jobs for a reference store.default ListReferenceImportJobsIterablelistReferenceImportJobsPaginator(Consumer<ListReferenceImportJobsRequest.Builder> listReferenceImportJobsRequest) This is a variant oflistReferenceImportJobs(software.amazon.awssdk.services.omics.model.ListReferenceImportJobsRequest)operation.default ListReferenceImportJobsIterablelistReferenceImportJobsPaginator(ListReferenceImportJobsRequest listReferenceImportJobsRequest) This is a variant oflistReferenceImportJobs(software.amazon.awssdk.services.omics.model.ListReferenceImportJobsRequest)operation.default ListReferencesResponselistReferences(Consumer<ListReferencesRequest.Builder> listReferencesRequest) Retrieves the metadata of one or more reference genomes in a reference store.default ListReferencesResponselistReferences(ListReferencesRequest listReferencesRequest) Retrieves the metadata of one or more reference genomes in a reference store.default ListReferencesIterablelistReferencesPaginator(Consumer<ListReferencesRequest.Builder> listReferencesRequest) This is a variant oflistReferences(software.amazon.awssdk.services.omics.model.ListReferencesRequest)operation.default ListReferencesIterablelistReferencesPaginator(ListReferencesRequest listReferencesRequest) This is a variant oflistReferences(software.amazon.awssdk.services.omics.model.ListReferencesRequest)operation.default ListReferenceStoresResponselistReferenceStores(Consumer<ListReferenceStoresRequest.Builder> listReferenceStoresRequest) Retrieves a list of reference stores linked to your account and returns their metadata in JSON format.default ListReferenceStoresResponselistReferenceStores(ListReferenceStoresRequest listReferenceStoresRequest) Retrieves a list of reference stores linked to your account and returns their metadata in JSON format.default ListReferenceStoresIterablelistReferenceStoresPaginator(Consumer<ListReferenceStoresRequest.Builder> listReferenceStoresRequest) This is a variant oflistReferenceStores(software.amazon.awssdk.services.omics.model.ListReferenceStoresRequest)operation.default ListReferenceStoresIterablelistReferenceStoresPaginator(ListReferenceStoresRequest listReferenceStoresRequest) This is a variant oflistReferenceStores(software.amazon.awssdk.services.omics.model.ListReferenceStoresRequest)operation.default ListRunCachesResponselistRunCaches(Consumer<ListRunCachesRequest.Builder> listRunCachesRequest) Retrieves a list of your run caches and the metadata for each cache.default ListRunCachesResponselistRunCaches(ListRunCachesRequest listRunCachesRequest) Retrieves a list of your run caches and the metadata for each cache.default ListRunCachesIterablelistRunCachesPaginator(Consumer<ListRunCachesRequest.Builder> listRunCachesRequest) This is a variant oflistRunCaches(software.amazon.awssdk.services.omics.model.ListRunCachesRequest)operation.default ListRunCachesIterablelistRunCachesPaginator(ListRunCachesRequest listRunCachesRequest) This is a variant oflistRunCaches(software.amazon.awssdk.services.omics.model.ListRunCachesRequest)operation.default ListRunGroupsResponselistRunGroups(Consumer<ListRunGroupsRequest.Builder> listRunGroupsRequest) Retrieves a list of all run groups and returns the metadata for each run group.default ListRunGroupsResponselistRunGroups(ListRunGroupsRequest listRunGroupsRequest) Retrieves a list of all run groups and returns the metadata for each run group.default ListRunGroupsIterablelistRunGroupsPaginator(Consumer<ListRunGroupsRequest.Builder> listRunGroupsRequest) This is a variant oflistRunGroups(software.amazon.awssdk.services.omics.model.ListRunGroupsRequest)operation.default ListRunGroupsIterablelistRunGroupsPaginator(ListRunGroupsRequest listRunGroupsRequest) This is a variant oflistRunGroups(software.amazon.awssdk.services.omics.model.ListRunGroupsRequest)operation.default ListRunsResponselistRuns(Consumer<ListRunsRequest.Builder> listRunsRequest) Retrieves a list of runs and returns each run's metadata and status.default ListRunsResponselistRuns(ListRunsRequest listRunsRequest) Retrieves a list of runs and returns each run's metadata and status.default ListRunsIterablelistRunsPaginator(Consumer<ListRunsRequest.Builder> listRunsRequest) This is a variant oflistRuns(software.amazon.awssdk.services.omics.model.ListRunsRequest)operation.default ListRunsIterablelistRunsPaginator(ListRunsRequest listRunsRequest) This is a variant oflistRuns(software.amazon.awssdk.services.omics.model.ListRunsRequest)operation.default ListRunTasksResponselistRunTasks(Consumer<ListRunTasksRequest.Builder> listRunTasksRequest) Returns a list of tasks and status information within their specified run.default ListRunTasksResponselistRunTasks(ListRunTasksRequest listRunTasksRequest) Returns a list of tasks and status information within their specified run.default ListRunTasksIterablelistRunTasksPaginator(Consumer<ListRunTasksRequest.Builder> listRunTasksRequest) This is a variant oflistRunTasks(software.amazon.awssdk.services.omics.model.ListRunTasksRequest)operation.default ListRunTasksIterablelistRunTasksPaginator(ListRunTasksRequest listRunTasksRequest) This is a variant oflistRunTasks(software.amazon.awssdk.services.omics.model.ListRunTasksRequest)operation.default ListSequenceStoresResponselistSequenceStores(Consumer<ListSequenceStoresRequest.Builder> listSequenceStoresRequest) Retrieves a list of sequence stores and returns each sequence store's metadata.default ListSequenceStoresResponselistSequenceStores(ListSequenceStoresRequest listSequenceStoresRequest) Retrieves a list of sequence stores and returns each sequence store's metadata.default ListSequenceStoresIterablelistSequenceStoresPaginator(Consumer<ListSequenceStoresRequest.Builder> listSequenceStoresRequest) This is a variant oflistSequenceStores(software.amazon.awssdk.services.omics.model.ListSequenceStoresRequest)operation.default ListSequenceStoresIterablelistSequenceStoresPaginator(ListSequenceStoresRequest listSequenceStoresRequest) This is a variant oflistSequenceStores(software.amazon.awssdk.services.omics.model.ListSequenceStoresRequest)operation.default ListSharesResponselistShares(Consumer<ListSharesRequest.Builder> listSharesRequest) Retrieves the resource shares associated with an account.default ListSharesResponselistShares(ListSharesRequest listSharesRequest) Retrieves the resource shares associated with an account.default ListSharesIterablelistSharesPaginator(Consumer<ListSharesRequest.Builder> listSharesRequest) This is a variant oflistShares(software.amazon.awssdk.services.omics.model.ListSharesRequest)operation.default ListSharesIterablelistSharesPaginator(ListSharesRequest listSharesRequest) This is a variant oflistShares(software.amazon.awssdk.services.omics.model.ListSharesRequest)operation.default ListTagsForResourceResponselistTagsForResource(Consumer<ListTagsForResourceRequest.Builder> listTagsForResourceRequest) Retrieves a list of tags for a resource.default ListTagsForResourceResponselistTagsForResource(ListTagsForResourceRequest listTagsForResourceRequest) Retrieves a list of tags for a resource.default ListVariantImportJobsResponselistVariantImportJobs(Consumer<ListVariantImportJobsRequest.Builder> listVariantImportJobsRequest) Retrieves a list of variant import jobs.default ListVariantImportJobsResponselistVariantImportJobs(ListVariantImportJobsRequest listVariantImportJobsRequest) Retrieves a list of variant import jobs.default ListVariantImportJobsIterablelistVariantImportJobsPaginator(Consumer<ListVariantImportJobsRequest.Builder> listVariantImportJobsRequest) This is a variant oflistVariantImportJobs(software.amazon.awssdk.services.omics.model.ListVariantImportJobsRequest)operation.default ListVariantImportJobsIterablelistVariantImportJobsPaginator(ListVariantImportJobsRequest listVariantImportJobsRequest) This is a variant oflistVariantImportJobs(software.amazon.awssdk.services.omics.model.ListVariantImportJobsRequest)operation.default ListVariantStoresResponselistVariantStores(Consumer<ListVariantStoresRequest.Builder> listVariantStoresRequest) Retrieves a list of variant stores.default ListVariantStoresResponselistVariantStores(ListVariantStoresRequest listVariantStoresRequest) Retrieves a list of variant stores.default ListVariantStoresIterablelistVariantStoresPaginator(Consumer<ListVariantStoresRequest.Builder> listVariantStoresRequest) This is a variant oflistVariantStores(software.amazon.awssdk.services.omics.model.ListVariantStoresRequest)operation.default ListVariantStoresIterablelistVariantStoresPaginator(ListVariantStoresRequest listVariantStoresRequest) This is a variant oflistVariantStores(software.amazon.awssdk.services.omics.model.ListVariantStoresRequest)operation.default ListWorkflowsResponselistWorkflows(Consumer<ListWorkflowsRequest.Builder> listWorkflowsRequest) Retrieves a list of existing workflows.default ListWorkflowsResponselistWorkflows(ListWorkflowsRequest listWorkflowsRequest) Retrieves a list of existing workflows.default ListWorkflowsIterablelistWorkflowsPaginator(Consumer<ListWorkflowsRequest.Builder> listWorkflowsRequest) This is a variant oflistWorkflows(software.amazon.awssdk.services.omics.model.ListWorkflowsRequest)operation.default ListWorkflowsIterablelistWorkflowsPaginator(ListWorkflowsRequest listWorkflowsRequest) This is a variant oflistWorkflows(software.amazon.awssdk.services.omics.model.ListWorkflowsRequest)operation.default ListWorkflowVersionsResponselistWorkflowVersions(Consumer<ListWorkflowVersionsRequest.Builder> listWorkflowVersionsRequest) Lists the workflow versions for the specified workflow.default ListWorkflowVersionsResponselistWorkflowVersions(ListWorkflowVersionsRequest listWorkflowVersionsRequest) Lists the workflow versions for the specified workflow.default ListWorkflowVersionsIterablelistWorkflowVersionsPaginator(Consumer<ListWorkflowVersionsRequest.Builder> listWorkflowVersionsRequest) This is a variant oflistWorkflowVersions(software.amazon.awssdk.services.omics.model.ListWorkflowVersionsRequest)operation.default ListWorkflowVersionsIterablelistWorkflowVersionsPaginator(ListWorkflowVersionsRequest listWorkflowVersionsRequest) This is a variant oflistWorkflowVersions(software.amazon.awssdk.services.omics.model.ListWorkflowVersionsRequest)operation.default PutS3AccessPolicyResponseputS3AccessPolicy(Consumer<PutS3AccessPolicyRequest.Builder> putS3AccessPolicyRequest) Adds an access policy to the specified store.default PutS3AccessPolicyResponseputS3AccessPolicy(PutS3AccessPolicyRequest putS3AccessPolicyRequest) Adds an access policy to the specified store.default OmicsServiceClientConfigurationThe SDK service client configuration exposes client settings to the user, e.g., ClientOverrideConfigurationstatic ServiceMetadatadefault StartAnnotationImportJobResponsestartAnnotationImportJob(Consumer<StartAnnotationImportJobRequest.Builder> startAnnotationImportJobRequest) Starts an annotation import job.default StartAnnotationImportJobResponsestartAnnotationImportJob(StartAnnotationImportJobRequest startAnnotationImportJobRequest) Starts an annotation import job.startReadSetActivationJob(Consumer<StartReadSetActivationJobRequest.Builder> startReadSetActivationJobRequest) Activates an archived read set and returns its metadata in a JSON formatted output.startReadSetActivationJob(StartReadSetActivationJobRequest startReadSetActivationJobRequest) Activates an archived read set and returns its metadata in a JSON formatted output.default StartReadSetExportJobResponsestartReadSetExportJob(Consumer<StartReadSetExportJobRequest.Builder> startReadSetExportJobRequest) Starts a read set export job.default StartReadSetExportJobResponsestartReadSetExportJob(StartReadSetExportJobRequest startReadSetExportJobRequest) Starts a read set export job.default StartReadSetImportJobResponsestartReadSetImportJob(Consumer<StartReadSetImportJobRequest.Builder> startReadSetImportJobRequest) Imports a read set from the sequence store.default StartReadSetImportJobResponsestartReadSetImportJob(StartReadSetImportJobRequest startReadSetImportJobRequest) Imports a read set from the sequence store.default StartReferenceImportJobResponsestartReferenceImportJob(Consumer<StartReferenceImportJobRequest.Builder> startReferenceImportJobRequest) Imports a reference genome from Amazon S3 into a specified reference store.default StartReferenceImportJobResponsestartReferenceImportJob(StartReferenceImportJobRequest startReferenceImportJobRequest) Imports a reference genome from Amazon S3 into a specified reference store.default StartRunResponsestartRun(Consumer<StartRunRequest.Builder> startRunRequest) Starts a new run and returns details about the run, or duplicates an existing run.default StartRunResponsestartRun(StartRunRequest startRunRequest) Starts a new run and returns details about the run, or duplicates an existing run.default StartVariantImportJobResponsestartVariantImportJob(Consumer<StartVariantImportJobRequest.Builder> startVariantImportJobRequest) Starts a variant import job.default StartVariantImportJobResponsestartVariantImportJob(StartVariantImportJobRequest startVariantImportJobRequest) Starts a variant import job.default TagResourceResponsetagResource(Consumer<TagResourceRequest.Builder> tagResourceRequest) Tags a resource.default TagResourceResponsetagResource(TagResourceRequest tagResourceRequest) Tags a resource.default UntagResourceResponseuntagResource(Consumer<UntagResourceRequest.Builder> untagResourceRequest) Removes tags from a resource.default UntagResourceResponseuntagResource(UntagResourceRequest untagResourceRequest) Removes tags from a resource.default UpdateAnnotationStoreResponseupdateAnnotationStore(Consumer<UpdateAnnotationStoreRequest.Builder> updateAnnotationStoreRequest) Updates an annotation store.default UpdateAnnotationStoreResponseupdateAnnotationStore(UpdateAnnotationStoreRequest updateAnnotationStoreRequest) Updates an annotation store.updateAnnotationStoreVersion(Consumer<UpdateAnnotationStoreVersionRequest.Builder> updateAnnotationStoreVersionRequest) Updates the description of an annotation store version.updateAnnotationStoreVersion(UpdateAnnotationStoreVersionRequest updateAnnotationStoreVersionRequest) Updates the description of an annotation store version.default UpdateRunCacheResponseupdateRunCache(Consumer<UpdateRunCacheRequest.Builder> updateRunCacheRequest) Updates a run cache using its ID and returns a response with no body if the operation is successful.default UpdateRunCacheResponseupdateRunCache(UpdateRunCacheRequest updateRunCacheRequest) Updates a run cache using its ID and returns a response with no body if the operation is successful.default UpdateRunGroupResponseupdateRunGroup(Consumer<UpdateRunGroupRequest.Builder> updateRunGroupRequest) Updates the settings of a run group and returns a response with no body if the operation is successful.default UpdateRunGroupResponseupdateRunGroup(UpdateRunGroupRequest updateRunGroupRequest) Updates the settings of a run group and returns a response with no body if the operation is successful.default UpdateSequenceStoreResponseupdateSequenceStore(Consumer<UpdateSequenceStoreRequest.Builder> updateSequenceStoreRequest) Update one or more parameters for the sequence store.default UpdateSequenceStoreResponseupdateSequenceStore(UpdateSequenceStoreRequest updateSequenceStoreRequest) Update one or more parameters for the sequence store.default UpdateVariantStoreResponseupdateVariantStore(Consumer<UpdateVariantStoreRequest.Builder> updateVariantStoreRequest) Updates a variant store.default UpdateVariantStoreResponseupdateVariantStore(UpdateVariantStoreRequest updateVariantStoreRequest) Updates a variant store.default UpdateWorkflowResponseupdateWorkflow(Consumer<UpdateWorkflowRequest.Builder> updateWorkflowRequest) Updates information about a workflow.default UpdateWorkflowResponseupdateWorkflow(UpdateWorkflowRequest updateWorkflowRequest) Updates information about a workflow.default UpdateWorkflowVersionResponseupdateWorkflowVersion(Consumer<UpdateWorkflowVersionRequest.Builder> updateWorkflowVersionRequest) Updates information about the workflow version.default UpdateWorkflowVersionResponseupdateWorkflowVersion(UpdateWorkflowVersionRequest updateWorkflowVersionRequest) Updates information about the workflow version.default UploadReadSetPartResponseuploadReadSetPart(Consumer<UploadReadSetPartRequest.Builder> uploadReadSetPartRequest, Path sourcePath) Uploads a specific part of a read set into a sequence store.default UploadReadSetPartResponseuploadReadSetPart(Consumer<UploadReadSetPartRequest.Builder> uploadReadSetPartRequest, RequestBody requestBody) Uploads a specific part of a read set into a sequence store.default UploadReadSetPartResponseuploadReadSetPart(UploadReadSetPartRequest uploadReadSetPartRequest, Path sourcePath) Uploads a specific part of a read set into a sequence store.default UploadReadSetPartResponseuploadReadSetPart(UploadReadSetPartRequest uploadReadSetPartRequest, RequestBody requestBody) Uploads a specific part of a read set into a sequence store.default OmicsWaiterwaiter()Create an instance ofOmicsWaiterusing this client.Methods inherited from interface software.amazon.awssdk.utils.SdkAutoCloseable
closeMethods inherited from interface software.amazon.awssdk.core.SdkClient
serviceName
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Field Details
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SERVICE_NAME
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SERVICE_METADATA_ID
Value for looking up the service's metadata from theServiceMetadataProvider.- See Also:
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Method Details
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abortMultipartReadSetUpload
default AbortMultipartReadSetUploadResponse abortMultipartReadSetUpload(AbortMultipartReadSetUploadRequest abortMultipartReadSetUploadRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Stops a multipart read set upload into a sequence store and returns a response with no body if the operation is successful. To confirm that a multipart read set upload has been stopped, use the
ListMultipartReadSetUploadsAPI operation to view all active multipart read set uploads.- Parameters:
abortMultipartReadSetUploadRequest-- Returns:
- Result of the AbortMultipartReadSetUpload operation returned by the service.
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abortMultipartReadSetUpload
default AbortMultipartReadSetUploadResponse abortMultipartReadSetUpload(Consumer<AbortMultipartReadSetUploadRequest.Builder> abortMultipartReadSetUploadRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Stops a multipart read set upload into a sequence store and returns a response with no body if the operation is successful. To confirm that a multipart read set upload has been stopped, use the
ListMultipartReadSetUploadsAPI operation to view all active multipart read set uploads.
This is a convenience which creates an instance of the
AbortMultipartReadSetUploadRequest.Builderavoiding the need to create one manually viaAbortMultipartReadSetUploadRequest.builder()- Parameters:
abortMultipartReadSetUploadRequest- AConsumerthat will call methods onAbortMultipartReadSetUploadRequest.Builderto create a request.- Returns:
- Result of the AbortMultipartReadSetUpload operation returned by the service.
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batchDeleteReadSet
default BatchDeleteReadSetResponse batchDeleteReadSet(BatchDeleteReadSetRequest batchDeleteReadSetRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes one or more read sets. If the operation is successful, it returns a response with no body. If there is an error with deleting one of the read sets, the operation returns an error list. If the operation successfully deletes only a subset of files, it will return an error list for the remaining files that fail to be deleted. There is a limit of 100 read sets that can be deleted in each
BatchDeleteReadSetAPI call.- Parameters:
batchDeleteReadSetRequest-- Returns:
- Result of the BatchDeleteReadSet operation returned by the service.
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batchDeleteReadSet
default BatchDeleteReadSetResponse batchDeleteReadSet(Consumer<BatchDeleteReadSetRequest.Builder> batchDeleteReadSetRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes one or more read sets. If the operation is successful, it returns a response with no body. If there is an error with deleting one of the read sets, the operation returns an error list. If the operation successfully deletes only a subset of files, it will return an error list for the remaining files that fail to be deleted. There is a limit of 100 read sets that can be deleted in each
BatchDeleteReadSetAPI call.
This is a convenience which creates an instance of the
BatchDeleteReadSetRequest.Builderavoiding the need to create one manually viaBatchDeleteReadSetRequest.builder()- Parameters:
batchDeleteReadSetRequest- AConsumerthat will call methods onBatchDeleteReadSetRequest.Builderto create a request.- Returns:
- Result of the BatchDeleteReadSet operation returned by the service.
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cancelAnnotationImportJob
default CancelAnnotationImportJobResponse cancelAnnotationImportJob(CancelAnnotationImportJobRequest cancelAnnotationImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Cancels an annotation import job.
- Parameters:
cancelAnnotationImportJobRequest-- Returns:
- Result of the CancelAnnotationImportJob operation returned by the service.
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cancelAnnotationImportJob
default CancelAnnotationImportJobResponse cancelAnnotationImportJob(Consumer<CancelAnnotationImportJobRequest.Builder> cancelAnnotationImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Cancels an annotation import job.
This is a convenience which creates an instance of the
CancelAnnotationImportJobRequest.Builderavoiding the need to create one manually viaCancelAnnotationImportJobRequest.builder()- Parameters:
cancelAnnotationImportJobRequest- AConsumerthat will call methods onCancelAnnotationImportJobRequest.Builderto create a request.- Returns:
- Result of the CancelAnnotationImportJob operation returned by the service.
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cancelRun
default CancelRunResponse cancelRun(CancelRunRequest cancelRunRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Cancels a run using its ID and returns a response with no body if the operation is successful. To confirm that the run has been cancelled, use the
ListRunsAPI operation to check that it is no longer listed.- Parameters:
cancelRunRequest-- Returns:
- Result of the CancelRun operation returned by the service.
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cancelRun
default CancelRunResponse cancelRun(Consumer<CancelRunRequest.Builder> cancelRunRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Cancels a run using its ID and returns a response with no body if the operation is successful. To confirm that the run has been cancelled, use the
ListRunsAPI operation to check that it is no longer listed.
This is a convenience which creates an instance of the
CancelRunRequest.Builderavoiding the need to create one manually viaCancelRunRequest.builder()- Parameters:
cancelRunRequest- AConsumerthat will call methods onCancelRunRequest.Builderto create a request.- Returns:
- Result of the CancelRun operation returned by the service.
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cancelVariantImportJob
default CancelVariantImportJobResponse cancelVariantImportJob(CancelVariantImportJobRequest cancelVariantImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Cancels a variant import job.
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cancelVariantImportJobRequest-- Returns:
- Result of the CancelVariantImportJob operation returned by the service.
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cancelVariantImportJob
default CancelVariantImportJobResponse cancelVariantImportJob(Consumer<CancelVariantImportJobRequest.Builder> cancelVariantImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Cancels a variant import job.
This is a convenience which creates an instance of the
CancelVariantImportJobRequest.Builderavoiding the need to create one manually viaCancelVariantImportJobRequest.builder()- Parameters:
cancelVariantImportJobRequest- AConsumerthat will call methods onCancelVariantImportJobRequest.Builderto create a request.- Returns:
- Result of the CancelVariantImportJob operation returned by the service.
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completeMultipartReadSetUpload
default CompleteMultipartReadSetUploadResponse completeMultipartReadSetUpload(CompleteMultipartReadSetUploadRequest completeMultipartReadSetUploadRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Completes a multipart read set upload into a sequence store after you have initiated the upload process with
CreateMultipartReadSetUploadand uploaded all read set parts usingUploadReadSetPart. You must specify the parts you uploaded using the parts parameter. If the operation is successful, it returns the read set ID(s) of the uploaded read set(s).For more information, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
completeMultipartReadSetUploadRequest-- Returns:
- Result of the CompleteMultipartReadSetUpload operation returned by the service.
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completeMultipartReadSetUpload
default CompleteMultipartReadSetUploadResponse completeMultipartReadSetUpload(Consumer<CompleteMultipartReadSetUploadRequest.Builder> completeMultipartReadSetUploadRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Completes a multipart read set upload into a sequence store after you have initiated the upload process with
CreateMultipartReadSetUploadand uploaded all read set parts usingUploadReadSetPart. You must specify the parts you uploaded using the parts parameter. If the operation is successful, it returns the read set ID(s) of the uploaded read set(s).For more information, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
CompleteMultipartReadSetUploadRequest.Builderavoiding the need to create one manually viaCompleteMultipartReadSetUploadRequest.builder()- Parameters:
completeMultipartReadSetUploadRequest- AConsumerthat will call methods onCompleteMultipartReadSetUploadRequest.Builderto create a request.- Returns:
- Result of the CompleteMultipartReadSetUpload operation returned by the service.
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createAnnotationStore
default CreateAnnotationStoreResponse createAnnotationStore(CreateAnnotationStoreRequest createAnnotationStoreRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Creates an annotation store.
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createAnnotationStoreRequest-- Returns:
- Result of the CreateAnnotationStore operation returned by the service.
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createAnnotationStore
default CreateAnnotationStoreResponse createAnnotationStore(Consumer<CreateAnnotationStoreRequest.Builder> createAnnotationStoreRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Creates an annotation store.
This is a convenience which creates an instance of the
CreateAnnotationStoreRequest.Builderavoiding the need to create one manually viaCreateAnnotationStoreRequest.builder()- Parameters:
createAnnotationStoreRequest- AConsumerthat will call methods onCreateAnnotationStoreRequest.Builderto create a request.- Returns:
- Result of the CreateAnnotationStore operation returned by the service.
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createAnnotationStoreVersion
default CreateAnnotationStoreVersionResponse createAnnotationStoreVersion(CreateAnnotationStoreVersionRequest createAnnotationStoreVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Creates a new version of an annotation store.
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createAnnotationStoreVersionRequest-- Returns:
- Result of the CreateAnnotationStoreVersion operation returned by the service.
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createAnnotationStoreVersion
default CreateAnnotationStoreVersionResponse createAnnotationStoreVersion(Consumer<CreateAnnotationStoreVersionRequest.Builder> createAnnotationStoreVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Creates a new version of an annotation store.
This is a convenience which creates an instance of the
CreateAnnotationStoreVersionRequest.Builderavoiding the need to create one manually viaCreateAnnotationStoreVersionRequest.builder()- Parameters:
createAnnotationStoreVersionRequest- AConsumerthat will call methods onCreateAnnotationStoreVersionRequest.Builderto create a request.- Returns:
- Result of the CreateAnnotationStoreVersion operation returned by the service.
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createMultipartReadSetUpload
default CreateMultipartReadSetUploadResponse createMultipartReadSetUpload(CreateMultipartReadSetUploadRequest createMultipartReadSetUploadRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Initiates a multipart read set upload for uploading partitioned source files into a sequence store. You can directly import source files from an EC2 instance and other local compute, or from an S3 bucket. To separate these source files into parts, use the
splitoperation. Each part cannot be larger than 100 MB. If the operation is successful, it provides anuploadIdwhich is required by theUploadReadSetPartAPI operation to upload parts into a sequence store.To continue uploading a multipart read set into your sequence store, you must use the
UploadReadSetPartAPI operation to upload each part individually following the steps below:-
Specify the
uploadIdobtained from the previous call toCreateMultipartReadSetUpload. -
Upload parts for that
uploadId.
When you have finished uploading parts, use the
CompleteMultipartReadSetUploadAPI to complete the multipart read set upload and to retrieve the final read set IDs in the response.To learn more about creating parts and the
splitoperation, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.- Parameters:
createMultipartReadSetUploadRequest-- Returns:
- Result of the CreateMultipartReadSetUpload operation returned by the service.
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createMultipartReadSetUpload
default CreateMultipartReadSetUploadResponse createMultipartReadSetUpload(Consumer<CreateMultipartReadSetUploadRequest.Builder> createMultipartReadSetUploadRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Initiates a multipart read set upload for uploading partitioned source files into a sequence store. You can directly import source files from an EC2 instance and other local compute, or from an S3 bucket. To separate these source files into parts, use the
splitoperation. Each part cannot be larger than 100 MB. If the operation is successful, it provides anuploadIdwhich is required by theUploadReadSetPartAPI operation to upload parts into a sequence store.To continue uploading a multipart read set into your sequence store, you must use the
UploadReadSetPartAPI operation to upload each part individually following the steps below:-
Specify the
uploadIdobtained from the previous call toCreateMultipartReadSetUpload. -
Upload parts for that
uploadId.
When you have finished uploading parts, use the
CompleteMultipartReadSetUploadAPI to complete the multipart read set upload and to retrieve the final read set IDs in the response.To learn more about creating parts and the
splitoperation, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
CreateMultipartReadSetUploadRequest.Builderavoiding the need to create one manually viaCreateMultipartReadSetUploadRequest.builder()- Parameters:
createMultipartReadSetUploadRequest- AConsumerthat will call methods onCreateMultipartReadSetUploadRequest.Builderto create a request.- Returns:
- Result of the CreateMultipartReadSetUpload operation returned by the service.
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createReferenceStore
default CreateReferenceStoreResponse createReferenceStore(CreateReferenceStoreRequest createReferenceStoreRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a reference store and returns metadata in JSON format. Reference stores are used to store reference genomes in FASTA format. A reference store is created when the first reference genome is imported. To import additional reference genomes from an Amazon S3 bucket, use the
StartReferenceImportJobAPI operation.For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
createReferenceStoreRequest-- Returns:
- Result of the CreateReferenceStore operation returned by the service.
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createReferenceStore
default CreateReferenceStoreResponse createReferenceStore(Consumer<CreateReferenceStoreRequest.Builder> createReferenceStoreRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a reference store and returns metadata in JSON format. Reference stores are used to store reference genomes in FASTA format. A reference store is created when the first reference genome is imported. To import additional reference genomes from an Amazon S3 bucket, use the
StartReferenceImportJobAPI operation.For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
CreateReferenceStoreRequest.Builderavoiding the need to create one manually viaCreateReferenceStoreRequest.builder()- Parameters:
createReferenceStoreRequest- AConsumerthat will call methods onCreateReferenceStoreRequest.Builderto create a request.- Returns:
- Result of the CreateReferenceStore operation returned by the service.
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createRunCache
default CreateRunCacheResponse createRunCache(CreateRunCacheRequest createRunCacheRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a run cache to store and reference task outputs from completed private runs. Specify an Amazon S3 location where Amazon Web Services HealthOmics saves the cached data. This data must be immediately accessible and not in an archived state. You can save intermediate task files to a run cache if they are declared as task outputs in the workflow definition file.
For more information, see Call caching and Creating a run cache in the Amazon Web Services HealthOmics User Guide.
- Parameters:
createRunCacheRequest-- Returns:
- Result of the CreateRunCache operation returned by the service.
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createRunCache
default CreateRunCacheResponse createRunCache(Consumer<CreateRunCacheRequest.Builder> createRunCacheRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a run cache to store and reference task outputs from completed private runs. Specify an Amazon S3 location where Amazon Web Services HealthOmics saves the cached data. This data must be immediately accessible and not in an archived state. You can save intermediate task files to a run cache if they are declared as task outputs in the workflow definition file.
For more information, see Call caching and Creating a run cache in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
CreateRunCacheRequest.Builderavoiding the need to create one manually viaCreateRunCacheRequest.builder()- Parameters:
createRunCacheRequest- AConsumerthat will call methods onCreateRunCacheRequest.Builderto create a request.- Returns:
- Result of the CreateRunCache operation returned by the service.
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createRunGroup
default CreateRunGroupResponse createRunGroup(CreateRunGroupRequest createRunGroupRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a run group to limit the compute resources for the runs that are added to the group. Returns an ARN, ID, and tags for the run group.
- Parameters:
createRunGroupRequest-- Returns:
- Result of the CreateRunGroup operation returned by the service.
- See Also:
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createRunGroup
default CreateRunGroupResponse createRunGroup(Consumer<CreateRunGroupRequest.Builder> createRunGroupRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a run group to limit the compute resources for the runs that are added to the group. Returns an ARN, ID, and tags for the run group.
This is a convenience which creates an instance of the
CreateRunGroupRequest.Builderavoiding the need to create one manually viaCreateRunGroupRequest.builder()- Parameters:
createRunGroupRequest- AConsumerthat will call methods onCreateRunGroupRequest.Builderto create a request.- Returns:
- Result of the CreateRunGroup operation returned by the service.
- See Also:
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createSequenceStore
default CreateSequenceStoreResponse createSequenceStore(CreateSequenceStoreRequest createSequenceStoreRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a sequence store and returns its metadata. Sequence stores are used to store sequence data files called read sets that are saved in FASTQ, BAM, uBAM, or CRAM formats. For aligned formats (BAM and CRAM), a sequence store can only use one reference genome. For unaligned formats (FASTQ and uBAM), a reference genome is not required. You can create multiple sequence stores per region per account.
The following are optional parameters you can specify for your sequence store:
-
Use
s3AccessConfigto configure your sequence store with S3 access logs (recommended). -
Use
sseConfigto define your own KMS key for encryption. -
Use
eTagAlgorithmFamilyto define which algorithm to use for the HealthOmics eTag on objects. -
Use
fallbackLocationto define a backup location for storing files that have failed a direct upload. -
Use
propagatedSetLevelTagsto configure tags that propagate to all objects in your store.
For more information, see Creating a HealthOmics sequence store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
createSequenceStoreRequest-- Returns:
- Result of the CreateSequenceStore operation returned by the service.
- See Also:
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createSequenceStore
default CreateSequenceStoreResponse createSequenceStore(Consumer<CreateSequenceStoreRequest.Builder> createSequenceStoreRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a sequence store and returns its metadata. Sequence stores are used to store sequence data files called read sets that are saved in FASTQ, BAM, uBAM, or CRAM formats. For aligned formats (BAM and CRAM), a sequence store can only use one reference genome. For unaligned formats (FASTQ and uBAM), a reference genome is not required. You can create multiple sequence stores per region per account.
The following are optional parameters you can specify for your sequence store:
-
Use
s3AccessConfigto configure your sequence store with S3 access logs (recommended). -
Use
sseConfigto define your own KMS key for encryption. -
Use
eTagAlgorithmFamilyto define which algorithm to use for the HealthOmics eTag on objects. -
Use
fallbackLocationto define a backup location for storing files that have failed a direct upload. -
Use
propagatedSetLevelTagsto configure tags that propagate to all objects in your store.
For more information, see Creating a HealthOmics sequence store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
CreateSequenceStoreRequest.Builderavoiding the need to create one manually viaCreateSequenceStoreRequest.builder()- Parameters:
createSequenceStoreRequest- AConsumerthat will call methods onCreateSequenceStoreRequest.Builderto create a request.- Returns:
- Result of the CreateSequenceStore operation returned by the service.
- See Also:
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createVariantStore
default CreateVariantStoreResponse createVariantStore(CreateVariantStoreRequest createVariantStoreRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Creates a variant store.
- Parameters:
createVariantStoreRequest-- Returns:
- Result of the CreateVariantStore operation returned by the service.
- See Also:
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createVariantStore
default CreateVariantStoreResponse createVariantStore(Consumer<CreateVariantStoreRequest.Builder> createVariantStoreRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Creates a variant store.
This is a convenience which creates an instance of the
CreateVariantStoreRequest.Builderavoiding the need to create one manually viaCreateVariantStoreRequest.builder()- Parameters:
createVariantStoreRequest- AConsumerthat will call methods onCreateVariantStoreRequest.Builderto create a request.- Returns:
- Result of the CreateVariantStore operation returned by the service.
- See Also:
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createWorkflow
default CreateWorkflowResponse createWorkflow(CreateWorkflowRequest createWorkflowRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:
-
Workflow definition files: Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in .zip format.
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(Optional) Parameter template: You can create a parameter template file that defines the run parameters, or Amazon Web Services HealthOmics can generate the parameter template for you.
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ECR container images: Create container images for the workflow in a private ECR repository, or synchronize images from a supported upstream registry with your Amazon ECR private repository.
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(Optional) Sentieon licenses: Request a Sentieon license if using the Sentieon software in a private workflow.
For more information, see Creating or updating a private workflow in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
- Parameters:
createWorkflowRequest-- Returns:
- Result of the CreateWorkflow operation returned by the service.
- See Also:
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createWorkflow
default CreateWorkflowResponse createWorkflow(Consumer<CreateWorkflowRequest.Builder> createWorkflowRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:
-
Workflow definition files: Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in .zip format.
-
(Optional) Parameter template: You can create a parameter template file that defines the run parameters, or Amazon Web Services HealthOmics can generate the parameter template for you.
-
ECR container images: Create container images for the workflow in a private ECR repository, or synchronize images from a supported upstream registry with your Amazon ECR private repository.
-
(Optional) Sentieon licenses: Request a Sentieon license if using the Sentieon software in a private workflow.
For more information, see Creating or updating a private workflow in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
CreateWorkflowRequest.Builderavoiding the need to create one manually viaCreateWorkflowRequest.builder()- Parameters:
createWorkflowRequest- AConsumerthat will call methods onCreateWorkflowRequest.Builderto create a request.- Returns:
- Result of the CreateWorkflow operation returned by the service.
- See Also:
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createWorkflowVersion
default CreateWorkflowVersionResponse createWorkflowVersion(CreateWorkflowVersionRequest createWorkflowVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a new workflow version for the workflow that you specify with the
workflowIdparameter.When you create a new version of a workflow, you need to specify the configuration for the new version. It doesn't inherit any configuration values from the workflow.
Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version.
Don't include any personally identifiable information (PII) in the version name. Version names appear in the workflow version ARN.
For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
- Parameters:
createWorkflowVersionRequest-- Returns:
- Result of the CreateWorkflowVersion operation returned by the service.
- See Also:
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createWorkflowVersion
default CreateWorkflowVersionResponse createWorkflowVersion(Consumer<CreateWorkflowVersionRequest.Builder> createWorkflowVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Creates a new workflow version for the workflow that you specify with the
workflowIdparameter.When you create a new version of a workflow, you need to specify the configuration for the new version. It doesn't inherit any configuration values from the workflow.
Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version.
Don't include any personally identifiable information (PII) in the version name. Version names appear in the workflow version ARN.
For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
CreateWorkflowVersionRequest.Builderavoiding the need to create one manually viaCreateWorkflowVersionRequest.builder()- Parameters:
createWorkflowVersionRequest- AConsumerthat will call methods onCreateWorkflowVersionRequest.Builderto create a request.- Returns:
- Result of the CreateWorkflowVersion operation returned by the service.
- See Also:
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deleteAnnotationStore
default DeleteAnnotationStoreResponse deleteAnnotationStore(DeleteAnnotationStoreRequest deleteAnnotationStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Deletes an annotation store.
- Parameters:
deleteAnnotationStoreRequest-- Returns:
- Result of the DeleteAnnotationStore operation returned by the service.
- See Also:
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deleteAnnotationStore
default DeleteAnnotationStoreResponse deleteAnnotationStore(Consumer<DeleteAnnotationStoreRequest.Builder> deleteAnnotationStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Deletes an annotation store.
This is a convenience which creates an instance of the
DeleteAnnotationStoreRequest.Builderavoiding the need to create one manually viaDeleteAnnotationStoreRequest.builder()- Parameters:
deleteAnnotationStoreRequest- AConsumerthat will call methods onDeleteAnnotationStoreRequest.Builderto create a request.- Returns:
- Result of the DeleteAnnotationStore operation returned by the service.
- See Also:
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deleteAnnotationStoreVersions
default DeleteAnnotationStoreVersionsResponse deleteAnnotationStoreVersions(DeleteAnnotationStoreVersionsRequest deleteAnnotationStoreVersionsRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Deletes one or multiple versions of an annotation store.
- Parameters:
deleteAnnotationStoreVersionsRequest-- Returns:
- Result of the DeleteAnnotationStoreVersions operation returned by the service.
- See Also:
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deleteAnnotationStoreVersions
default DeleteAnnotationStoreVersionsResponse deleteAnnotationStoreVersions(Consumer<DeleteAnnotationStoreVersionsRequest.Builder> deleteAnnotationStoreVersionsRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Deletes one or multiple versions of an annotation store.
This is a convenience which creates an instance of the
DeleteAnnotationStoreVersionsRequest.Builderavoiding the need to create one manually viaDeleteAnnotationStoreVersionsRequest.builder()- Parameters:
deleteAnnotationStoreVersionsRequest- AConsumerthat will call methods onDeleteAnnotationStoreVersionsRequest.Builderto create a request.- Returns:
- Result of the DeleteAnnotationStoreVersions operation returned by the service.
- See Also:
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deleteReference
default DeleteReferenceResponse deleteReference(DeleteReferenceRequest deleteReferenceRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a reference genome and returns a response with no body if the operation is successful. The read set associated with the reference genome must first be deleted before deleting the reference genome. After the reference genome is deleted, you can delete the reference store using the
DeleteReferenceStoreAPI operation.For more information, see Deleting HealthOmics reference and sequence stores in the Amazon Web Services HealthOmics User Guide.
- Parameters:
deleteReferenceRequest-- Returns:
- Result of the DeleteReference operation returned by the service.
- See Also:
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deleteReference
default DeleteReferenceResponse deleteReference(Consumer<DeleteReferenceRequest.Builder> deleteReferenceRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a reference genome and returns a response with no body if the operation is successful. The read set associated with the reference genome must first be deleted before deleting the reference genome. After the reference genome is deleted, you can delete the reference store using the
DeleteReferenceStoreAPI operation.For more information, see Deleting HealthOmics reference and sequence stores in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
DeleteReferenceRequest.Builderavoiding the need to create one manually viaDeleteReferenceRequest.builder()- Parameters:
deleteReferenceRequest- AConsumerthat will call methods onDeleteReferenceRequest.Builderto create a request.- Returns:
- Result of the DeleteReference operation returned by the service.
- See Also:
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deleteReferenceStore
default DeleteReferenceStoreResponse deleteReferenceStore(DeleteReferenceStoreRequest deleteReferenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a reference store and returns a response with no body if the operation is successful. You can only delete a reference store when it does not contain any reference genomes. To empty a reference store, use
DeleteReference.For more information about your workflow status, see Deleting HealthOmics reference and sequence stores in the Amazon Web Services HealthOmics User Guide.
- Parameters:
deleteReferenceStoreRequest-- Returns:
- Result of the DeleteReferenceStore operation returned by the service.
- See Also:
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deleteReferenceStore
default DeleteReferenceStoreResponse deleteReferenceStore(Consumer<DeleteReferenceStoreRequest.Builder> deleteReferenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a reference store and returns a response with no body if the operation is successful. You can only delete a reference store when it does not contain any reference genomes. To empty a reference store, use
DeleteReference.For more information about your workflow status, see Deleting HealthOmics reference and sequence stores in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
DeleteReferenceStoreRequest.Builderavoiding the need to create one manually viaDeleteReferenceStoreRequest.builder()- Parameters:
deleteReferenceStoreRequest- AConsumerthat will call methods onDeleteReferenceStoreRequest.Builderto create a request.- Returns:
- Result of the DeleteReferenceStore operation returned by the service.
- See Also:
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deleteRun
default DeleteRunResponse deleteRun(DeleteRunRequest deleteRunRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a run and returns a response with no body if the operation is successful. You can only delete a run that has reached a
COMPLETED,FAILED, orCANCELLEDstage. A completed run has delivered an output, or was cancelled and resulted in no output. When you delete a run, only the metadata associated with the run is deleted. The run outputs remain in Amazon S3 and logs remain in CloudWatch.To verify that the workflow is deleted:
-
Use
ListRunsto confirm the workflow no longer appears in the list. -
Use
GetRunto verify the workflow cannot be found.
- Parameters:
deleteRunRequest-- Returns:
- Result of the DeleteRun operation returned by the service.
- See Also:
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deleteRun
default DeleteRunResponse deleteRun(Consumer<DeleteRunRequest.Builder> deleteRunRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a run and returns a response with no body if the operation is successful. You can only delete a run that has reached a
COMPLETED,FAILED, orCANCELLEDstage. A completed run has delivered an output, or was cancelled and resulted in no output. When you delete a run, only the metadata associated with the run is deleted. The run outputs remain in Amazon S3 and logs remain in CloudWatch.To verify that the workflow is deleted:
-
Use
ListRunsto confirm the workflow no longer appears in the list. -
Use
GetRunto verify the workflow cannot be found.
This is a convenience which creates an instance of the
DeleteRunRequest.Builderavoiding the need to create one manually viaDeleteRunRequest.builder()- Parameters:
deleteRunRequest- AConsumerthat will call methods onDeleteRunRequest.Builderto create a request.- Returns:
- Result of the DeleteRun operation returned by the service.
- See Also:
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deleteRunCache
default DeleteRunCacheResponse deleteRunCache(DeleteRunCacheRequest deleteRunCacheRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a run cache and returns a response with no body if the operation is successful. This action removes the cache metadata stored in the service account, but does not delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3
Deleteoperations.For more information, see Deleting a run cache in the Amazon Web Services HealthOmics User Guide.
- Parameters:
deleteRunCacheRequest-- Returns:
- Result of the DeleteRunCache operation returned by the service.
- See Also:
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deleteRunCache
default DeleteRunCacheResponse deleteRunCache(Consumer<DeleteRunCacheRequest.Builder> deleteRunCacheRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a run cache and returns a response with no body if the operation is successful. This action removes the cache metadata stored in the service account, but does not delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3
Deleteoperations.For more information, see Deleting a run cache in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
DeleteRunCacheRequest.Builderavoiding the need to create one manually viaDeleteRunCacheRequest.builder()- Parameters:
deleteRunCacheRequest- AConsumerthat will call methods onDeleteRunCacheRequest.Builderto create a request.- Returns:
- Result of the DeleteRunCache operation returned by the service.
- See Also:
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deleteRunGroup
default DeleteRunGroupResponse deleteRunGroup(DeleteRunGroupRequest deleteRunGroupRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a run group and returns a response with no body if the operation is successful.
To verify that the run group is deleted:
-
Use
ListRunGroupsto confirm the workflow no longer appears in the list. -
Use
GetRunGroupto verify the workflow cannot be found.
- Parameters:
deleteRunGroupRequest-- Returns:
- Result of the DeleteRunGroup operation returned by the service.
- See Also:
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deleteRunGroup
default DeleteRunGroupResponse deleteRunGroup(Consumer<DeleteRunGroupRequest.Builder> deleteRunGroupRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a run group and returns a response with no body if the operation is successful.
To verify that the run group is deleted:
-
Use
ListRunGroupsto confirm the workflow no longer appears in the list. -
Use
GetRunGroupto verify the workflow cannot be found.
This is a convenience which creates an instance of the
DeleteRunGroupRequest.Builderavoiding the need to create one manually viaDeleteRunGroupRequest.builder()- Parameters:
deleteRunGroupRequest- AConsumerthat will call methods onDeleteRunGroupRequest.Builderto create a request.- Returns:
- Result of the DeleteRunGroup operation returned by the service.
- See Also:
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deleteS3AccessPolicy
default DeleteS3AccessPolicyResponse deleteS3AccessPolicy(DeleteS3AccessPolicyRequest deleteS3AccessPolicyRequest) throws NotSupportedOperationException, InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes an access policy for the specified store.
- Parameters:
deleteS3AccessPolicyRequest-- Returns:
- Result of the DeleteS3AccessPolicy operation returned by the service.
- See Also:
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deleteS3AccessPolicy
default DeleteS3AccessPolicyResponse deleteS3AccessPolicy(Consumer<DeleteS3AccessPolicyRequest.Builder> deleteS3AccessPolicyRequest) throws NotSupportedOperationException, InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes an access policy for the specified store.
This is a convenience which creates an instance of the
DeleteS3AccessPolicyRequest.Builderavoiding the need to create one manually viaDeleteS3AccessPolicyRequest.builder()- Parameters:
deleteS3AccessPolicyRequest- AConsumerthat will call methods onDeleteS3AccessPolicyRequest.Builderto create a request.- Returns:
- Result of the DeleteS3AccessPolicy operation returned by the service.
- See Also:
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deleteSequenceStore
default DeleteSequenceStoreResponse deleteSequenceStore(DeleteSequenceStoreRequest deleteSequenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a sequence store and returns a response with no body if the operation is successful. You can only delete a sequence store when it does not contain any read sets.
Use the
BatchDeleteReadSetAPI operation to ensure that all read sets in the sequence store are deleted. When a sequence store is deleted, all tags associated with the store are also deleted.For more information, see Deleting HealthOmics reference and sequence stores in the Amazon Web Services HealthOmics User Guide.
- Parameters:
deleteSequenceStoreRequest-- Returns:
- Result of the DeleteSequenceStore operation returned by the service.
- See Also:
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deleteSequenceStore
default DeleteSequenceStoreResponse deleteSequenceStore(Consumer<DeleteSequenceStoreRequest.Builder> deleteSequenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a sequence store and returns a response with no body if the operation is successful. You can only delete a sequence store when it does not contain any read sets.
Use the
BatchDeleteReadSetAPI operation to ensure that all read sets in the sequence store are deleted. When a sequence store is deleted, all tags associated with the store are also deleted.For more information, see Deleting HealthOmics reference and sequence stores in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
DeleteSequenceStoreRequest.Builderavoiding the need to create one manually viaDeleteSequenceStoreRequest.builder()- Parameters:
deleteSequenceStoreRequest- AConsumerthat will call methods onDeleteSequenceStoreRequest.Builderto create a request.- Returns:
- Result of the DeleteSequenceStore operation returned by the service.
- See Also:
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deleteVariantStore
default DeleteVariantStoreResponse deleteVariantStore(DeleteVariantStoreRequest deleteVariantStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Deletes a variant store.
- Parameters:
deleteVariantStoreRequest-- Returns:
- Result of the DeleteVariantStore operation returned by the service.
- See Also:
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deleteVariantStore
default DeleteVariantStoreResponse deleteVariantStore(Consumer<DeleteVariantStoreRequest.Builder> deleteVariantStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Deletes a variant store.
This is a convenience which creates an instance of the
DeleteVariantStoreRequest.Builderavoiding the need to create one manually viaDeleteVariantStoreRequest.builder()- Parameters:
deleteVariantStoreRequest- AConsumerthat will call methods onDeleteVariantStoreRequest.Builderto create a request.- Returns:
- Result of the DeleteVariantStore operation returned by the service.
- See Also:
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deleteWorkflow
default DeleteWorkflowResponse deleteWorkflow(DeleteWorkflowRequest deleteWorkflowRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a workflow by specifying its ID. This operation returns a response with no body if the deletion is successful.
To verify that the workflow is deleted:
-
Use
ListWorkflowsto confirm the workflow no longer appears in the list. -
Use
GetWorkflowto verify the workflow cannot be found.
- Parameters:
deleteWorkflowRequest-- Returns:
- Result of the DeleteWorkflow operation returned by the service.
- See Also:
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deleteWorkflow
default DeleteWorkflowResponse deleteWorkflow(Consumer<DeleteWorkflowRequest.Builder> deleteWorkflowRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a workflow by specifying its ID. This operation returns a response with no body if the deletion is successful.
To verify that the workflow is deleted:
-
Use
ListWorkflowsto confirm the workflow no longer appears in the list. -
Use
GetWorkflowto verify the workflow cannot be found.
This is a convenience which creates an instance of the
DeleteWorkflowRequest.Builderavoiding the need to create one manually viaDeleteWorkflowRequest.builder()- Parameters:
deleteWorkflowRequest- AConsumerthat will call methods onDeleteWorkflowRequest.Builderto create a request.- Returns:
- Result of the DeleteWorkflow operation returned by the service.
- See Also:
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deleteWorkflowVersion
default DeleteWorkflowVersionResponse deleteWorkflowVersion(DeleteWorkflowVersionRequest deleteWorkflowVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a workflow version. Deleting a workflow version doesn't affect any ongoing runs that are using the workflow version.
For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
- Parameters:
deleteWorkflowVersionRequest-- Returns:
- Result of the DeleteWorkflowVersion operation returned by the service.
- See Also:
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deleteWorkflowVersion
default DeleteWorkflowVersionResponse deleteWorkflowVersion(Consumer<DeleteWorkflowVersionRequest.Builder> deleteWorkflowVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Deletes a workflow version. Deleting a workflow version doesn't affect any ongoing runs that are using the workflow version.
For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
DeleteWorkflowVersionRequest.Builderavoiding the need to create one manually viaDeleteWorkflowVersionRequest.builder()- Parameters:
deleteWorkflowVersionRequest- AConsumerthat will call methods onDeleteWorkflowVersionRequest.Builderto create a request.- Returns:
- Result of the DeleteWorkflowVersion operation returned by the service.
- See Also:
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getAnnotationImportJob
default GetAnnotationImportJobResponse getAnnotationImportJob(GetAnnotationImportJobRequest getAnnotationImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Gets information about an annotation import job.
- Parameters:
getAnnotationImportJobRequest-- Returns:
- Result of the GetAnnotationImportJob operation returned by the service.
- See Also:
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getAnnotationImportJob
default GetAnnotationImportJobResponse getAnnotationImportJob(Consumer<GetAnnotationImportJobRequest.Builder> getAnnotationImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Gets information about an annotation import job.
This is a convenience which creates an instance of the
GetAnnotationImportJobRequest.Builderavoiding the need to create one manually viaGetAnnotationImportJobRequest.builder()- Parameters:
getAnnotationImportJobRequest- AConsumerthat will call methods onGetAnnotationImportJobRequest.Builderto create a request.- Returns:
- Result of the GetAnnotationImportJob operation returned by the service.
- See Also:
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getAnnotationStore
default GetAnnotationStoreResponse getAnnotationStore(GetAnnotationStoreRequest getAnnotationStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Gets information about an annotation store.
- Parameters:
getAnnotationStoreRequest-- Returns:
- Result of the GetAnnotationStore operation returned by the service.
- See Also:
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getAnnotationStore
default GetAnnotationStoreResponse getAnnotationStore(Consumer<GetAnnotationStoreRequest.Builder> getAnnotationStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Gets information about an annotation store.
This is a convenience which creates an instance of the
GetAnnotationStoreRequest.Builderavoiding the need to create one manually viaGetAnnotationStoreRequest.builder()- Parameters:
getAnnotationStoreRequest- AConsumerthat will call methods onGetAnnotationStoreRequest.Builderto create a request.- Returns:
- Result of the GetAnnotationStore operation returned by the service.
- See Also:
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getAnnotationStoreVersion
default GetAnnotationStoreVersionResponse getAnnotationStoreVersion(GetAnnotationStoreVersionRequest getAnnotationStoreVersionRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves the metadata for an annotation store version.
- Parameters:
getAnnotationStoreVersionRequest-- Returns:
- Result of the GetAnnotationStoreVersion operation returned by the service.
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getAnnotationStoreVersion
default GetAnnotationStoreVersionResponse getAnnotationStoreVersion(Consumer<GetAnnotationStoreVersionRequest.Builder> getAnnotationStoreVersionRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves the metadata for an annotation store version.
This is a convenience which creates an instance of the
GetAnnotationStoreVersionRequest.Builderavoiding the need to create one manually viaGetAnnotationStoreVersionRequest.builder()- Parameters:
getAnnotationStoreVersionRequest- AConsumerthat will call methods onGetAnnotationStoreVersionRequest.Builderto create a request.- Returns:
- Result of the GetAnnotationStoreVersion operation returned by the service.
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getReadSet
default <ReturnT> ReturnT getReadSet(GetReadSetRequest getReadSetRequest, ResponseTransformer<GetReadSetResponse, ReturnT> responseTransformer) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsExceptionRetrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.
- Parameters:
getReadSetRequest-responseTransformer- Functional interface for processing the streamed response content. The unmarshalled GetReadSetResponse and an InputStream to the response content are provided as parameters to the callback. The callback may return a transformed type which will be the return value of this method. SeeResponseTransformerfor details on implementing this interface and for links to pre-canned implementations for common scenarios like downloading to a file. The service documentation for the response content is as follows 'The read set file payload.
'.- Returns:
- The transformed result of the ResponseTransformer.
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getReadSet
default <ReturnT> ReturnT getReadSet(Consumer<GetReadSetRequest.Builder> getReadSetRequest, ResponseTransformer<GetReadSetResponse, ReturnT> responseTransformer) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsExceptionRetrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.
This is a convenience which creates an instance of the
GetReadSetRequest.Builderavoiding the need to create one manually viaGetReadSetRequest.builder()- Parameters:
getReadSetRequest- AConsumerthat will call methods onGetReadSetRequest.Builderto create a request.responseTransformer- Functional interface for processing the streamed response content. The unmarshalled GetReadSetResponse and an InputStream to the response content are provided as parameters to the callback. The callback may return a transformed type which will be the return value of this method. SeeResponseTransformerfor details on implementing this interface and for links to pre-canned implementations for common scenarios like downloading to a file. The service documentation for the response content is as follows 'The read set file payload.
'.- Returns:
- The transformed result of the ResponseTransformer.
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getReadSet
default GetReadSetResponse getReadSet(GetReadSetRequest getReadSetRequest, Path destinationPath) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.
- Parameters:
getReadSetRequest-destinationPath-Pathto file that response contents will be written to. The file must not exist or this method will throw an exception. If the file is not writable by the current user then an exception will be thrown. The service documentation for the response content is as follows 'The read set file payload.
'.- Returns:
- The transformed result of the ResponseTransformer.
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getReadSet
default GetReadSetResponse getReadSet(Consumer<GetReadSetRequest.Builder> getReadSetRequest, Path destinationPath) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.
This is a convenience which creates an instance of the
GetReadSetRequest.Builderavoiding the need to create one manually viaGetReadSetRequest.builder()- Parameters:
getReadSetRequest- AConsumerthat will call methods onGetReadSetRequest.Builderto create a request.destinationPath-Pathto file that response contents will be written to. The file must not exist or this method will throw an exception. If the file is not writable by the current user then an exception will be thrown. The service documentation for the response content is as follows 'The read set file payload.
'.- Returns:
- The transformed result of the ResponseTransformer.
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getReadSet
default ResponseInputStream<GetReadSetResponse> getReadSet(GetReadSetRequest getReadSetRequest) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.
- Parameters:
getReadSetRequest-- Returns:
- A
ResponseInputStreamcontaining data streamed from service. Note that this is an unmanaged reference to the underlying HTTP connection so great care must be taken to ensure all data if fully read from the input stream and that it is properly closed. Failure to do so may result in sub-optimal behavior and exhausting connections in the connection pool. The unmarshalled response object can be obtained viaResponseInputStream.response(). The service documentation for the response content is as follows 'The read set file payload.
'. - See Also:
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getReadSet
default ResponseInputStream<GetReadSetResponse> getReadSet(Consumer<GetReadSetRequest.Builder> getReadSetRequest) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.
This is a convenience which creates an instance of the
GetReadSetRequest.Builderavoiding the need to create one manually viaGetReadSetRequest.builder()- Parameters:
getReadSetRequest- AConsumerthat will call methods onGetReadSetRequest.Builderto create a request.- Returns:
- A
ResponseInputStreamcontaining data streamed from service. Note that this is an unmanaged reference to the underlying HTTP connection so great care must be taken to ensure all data if fully read from the input stream and that it is properly closed. Failure to do so may result in sub-optimal behavior and exhausting connections in the connection pool. The unmarshalled response object can be obtained viaResponseInputStream.response(). The service documentation for the response content is as follows 'The read set file payload.
'. - See Also:
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getReadSetAsBytes
default ResponseBytes<GetReadSetResponse> getReadSetAsBytes(GetReadSetRequest getReadSetRequest) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.
- Parameters:
getReadSetRequest-- Returns:
- A
ResponseBytesthat loads the data streamed from the service into memory and exposes it in convenient in-memory representations like a byte buffer or string. The unmarshalled response object can be obtained viaResponseBytes.response(). The service documentation for the response content is as follows 'The read set file payload.
'. - See Also:
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getReadSetAsBytes
default ResponseBytes<GetReadSetResponse> getReadSetAsBytes(Consumer<GetReadSetRequest.Builder> getReadSetRequest) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded. You must have read sets uploaded to your sequence store in order to run this operation.
This is a convenience which creates an instance of the
GetReadSetRequest.Builderavoiding the need to create one manually viaGetReadSetRequest.builder()- Parameters:
getReadSetRequest- AConsumerthat will call methods onGetReadSetRequest.Builderto create a request.- Returns:
- A
ResponseBytesthat loads the data streamed from the service into memory and exposes it in convenient in-memory representations like a byte buffer or string. The unmarshalled response object can be obtained viaResponseBytes.response(). The service documentation for the response content is as follows 'The read set file payload.
'. - See Also:
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getReadSetActivationJob
default GetReadSetActivationJobResponse getReadSetActivationJob(GetReadSetActivationJobRequest getReadSetActivationJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Returns detailed information about the status of a read set activation job in JSON format.
- Parameters:
getReadSetActivationJobRequest-- Returns:
- Result of the GetReadSetActivationJob operation returned by the service.
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getReadSetActivationJob
default GetReadSetActivationJobResponse getReadSetActivationJob(Consumer<GetReadSetActivationJobRequest.Builder> getReadSetActivationJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Returns detailed information about the status of a read set activation job in JSON format.
This is a convenience which creates an instance of the
GetReadSetActivationJobRequest.Builderavoiding the need to create one manually viaGetReadSetActivationJobRequest.builder()- Parameters:
getReadSetActivationJobRequest- AConsumerthat will call methods onGetReadSetActivationJobRequest.Builderto create a request.- Returns:
- Result of the GetReadSetActivationJob operation returned by the service.
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getReadSetExportJob
default GetReadSetExportJobResponse getReadSetExportJob(GetReadSetExportJobRequest getReadSetExportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves status information about a read set export job and returns the data in JSON format. Use this operation to actively monitor the progress of an export job.
- Parameters:
getReadSetExportJobRequest-- Returns:
- Result of the GetReadSetExportJob operation returned by the service.
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getReadSetExportJob
default GetReadSetExportJobResponse getReadSetExportJob(Consumer<GetReadSetExportJobRequest.Builder> getReadSetExportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves status information about a read set export job and returns the data in JSON format. Use this operation to actively monitor the progress of an export job.
This is a convenience which creates an instance of the
GetReadSetExportJobRequest.Builderavoiding the need to create one manually viaGetReadSetExportJobRequest.builder()- Parameters:
getReadSetExportJobRequest- AConsumerthat will call methods onGetReadSetExportJobRequest.Builderto create a request.- Returns:
- Result of the GetReadSetExportJob operation returned by the service.
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getReadSetImportJob
default GetReadSetImportJobResponse getReadSetImportJob(GetReadSetImportJobRequest getReadSetImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets detailed and status information about a read set import job and returns the data in JSON format.
- Parameters:
getReadSetImportJobRequest-- Returns:
- Result of the GetReadSetImportJob operation returned by the service.
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getReadSetImportJob
default GetReadSetImportJobResponse getReadSetImportJob(Consumer<GetReadSetImportJobRequest.Builder> getReadSetImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets detailed and status information about a read set import job and returns the data in JSON format.
This is a convenience which creates an instance of the
GetReadSetImportJobRequest.Builderavoiding the need to create one manually viaGetReadSetImportJobRequest.builder()- Parameters:
getReadSetImportJobRequest- AConsumerthat will call methods onGetReadSetImportJobRequest.Builderto create a request.- Returns:
- Result of the GetReadSetImportJob operation returned by the service.
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getReadSetMetadata
default GetReadSetMetadataResponse getReadSetMetadata(GetReadSetMetadataRequest getReadSetMetadataRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves the metadata for a read set from a sequence store in JSON format. This operation does not return tags. To retrieve the list of tags for a read set, use the
ListTagsForResourceAPI operation.- Parameters:
getReadSetMetadataRequest-- Returns:
- Result of the GetReadSetMetadata operation returned by the service.
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getReadSetMetadata
default GetReadSetMetadataResponse getReadSetMetadata(Consumer<GetReadSetMetadataRequest.Builder> getReadSetMetadataRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves the metadata for a read set from a sequence store in JSON format. This operation does not return tags. To retrieve the list of tags for a read set, use the
ListTagsForResourceAPI operation.
This is a convenience which creates an instance of the
GetReadSetMetadataRequest.Builderavoiding the need to create one manually viaGetReadSetMetadataRequest.builder()- Parameters:
getReadSetMetadataRequest- AConsumerthat will call methods onGetReadSetMetadataRequest.Builderto create a request.- Returns:
- Result of the GetReadSetMetadata operation returned by the service.
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getReference
default <ReturnT> ReturnT getReference(GetReferenceRequest getReferenceRequest, ResponseTransformer<GetReferenceResponse, ReturnT> responseTransformer) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsExceptionDownloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.
For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
getReferenceRequest-responseTransformer- Functional interface for processing the streamed response content. The unmarshalled GetReferenceResponse and an InputStream to the response content are provided as parameters to the callback. The callback may return a transformed type which will be the return value of this method. SeeResponseTransformerfor details on implementing this interface and for links to pre-canned implementations for common scenarios like downloading to a file. The service documentation for the response content is as follows 'The reference file payload.
'.- Returns:
- The transformed result of the ResponseTransformer.
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getReference
default <ReturnT> ReturnT getReference(Consumer<GetReferenceRequest.Builder> getReferenceRequest, ResponseTransformer<GetReferenceResponse, ReturnT> responseTransformer) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsExceptionDownloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.
For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
GetReferenceRequest.Builderavoiding the need to create one manually viaGetReferenceRequest.builder()- Parameters:
getReferenceRequest- AConsumerthat will call methods onGetReferenceRequest.Builderto create a request.responseTransformer- Functional interface for processing the streamed response content. The unmarshalled GetReferenceResponse and an InputStream to the response content are provided as parameters to the callback. The callback may return a transformed type which will be the return value of this method. SeeResponseTransformerfor details on implementing this interface and for links to pre-canned implementations for common scenarios like downloading to a file. The service documentation for the response content is as follows 'The reference file payload.
'.- Returns:
- The transformed result of the ResponseTransformer.
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getReference
default GetReferenceResponse getReference(GetReferenceRequest getReferenceRequest, Path destinationPath) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.
For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
getReferenceRequest-destinationPath-Pathto file that response contents will be written to. The file must not exist or this method will throw an exception. If the file is not writable by the current user then an exception will be thrown. The service documentation for the response content is as follows 'The reference file payload.
'.- Returns:
- The transformed result of the ResponseTransformer.
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getReference
default GetReferenceResponse getReference(Consumer<GetReferenceRequest.Builder> getReferenceRequest, Path destinationPath) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.
For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
GetReferenceRequest.Builderavoiding the need to create one manually viaGetReferenceRequest.builder()- Parameters:
getReferenceRequest- AConsumerthat will call methods onGetReferenceRequest.Builderto create a request.destinationPath-Pathto file that response contents will be written to. The file must not exist or this method will throw an exception. If the file is not writable by the current user then an exception will be thrown. The service documentation for the response content is as follows 'The reference file payload.
'.- Returns:
- The transformed result of the ResponseTransformer.
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getReference
default ResponseInputStream<GetReferenceResponse> getReference(GetReferenceRequest getReferenceRequest) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.
For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
getReferenceRequest-- Returns:
- A
ResponseInputStreamcontaining data streamed from service. Note that this is an unmanaged reference to the underlying HTTP connection so great care must be taken to ensure all data if fully read from the input stream and that it is properly closed. Failure to do so may result in sub-optimal behavior and exhausting connections in the connection pool. The unmarshalled response object can be obtained viaResponseInputStream.response(). The service documentation for the response content is as follows 'The reference file payload.
'. - See Also:
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getReference
default ResponseInputStream<GetReferenceResponse> getReference(Consumer<GetReferenceRequest.Builder> getReferenceRequest) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.
For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
GetReferenceRequest.Builderavoiding the need to create one manually viaGetReferenceRequest.builder()- Parameters:
getReferenceRequest- AConsumerthat will call methods onGetReferenceRequest.Builderto create a request.- Returns:
- A
ResponseInputStreamcontaining data streamed from service. Note that this is an unmanaged reference to the underlying HTTP connection so great care must be taken to ensure all data if fully read from the input stream and that it is properly closed. Failure to do so may result in sub-optimal behavior and exhausting connections in the connection pool. The unmarshalled response object can be obtained viaResponseInputStream.response(). The service documentation for the response content is as follows 'The reference file payload.
'. - See Also:
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getReferenceAsBytes
default ResponseBytes<GetReferenceResponse> getReferenceAsBytes(GetReferenceRequest getReferenceRequest) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.
For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
getReferenceRequest-- Returns:
- A
ResponseBytesthat loads the data streamed from the service into memory and exposes it in convenient in-memory representations like a byte buffer or string. The unmarshalled response object can be obtained viaResponseBytes.response(). The service documentation for the response content is as follows 'The reference file payload.
'. - See Also:
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getReferenceAsBytes
default ResponseBytes<GetReferenceResponse> getReferenceAsBytes(Consumer<GetReferenceRequest.Builder> getReferenceRequest) throws InternalServerException, RangeNotSatisfiableException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.
For more information, see Creating a HealthOmics reference store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
GetReferenceRequest.Builderavoiding the need to create one manually viaGetReferenceRequest.builder()- Parameters:
getReferenceRequest- AConsumerthat will call methods onGetReferenceRequest.Builderto create a request.- Returns:
- A
ResponseBytesthat loads the data streamed from the service into memory and exposes it in convenient in-memory representations like a byte buffer or string. The unmarshalled response object can be obtained viaResponseBytes.response(). The service documentation for the response content is as follows 'The reference file payload.
'. - See Also:
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getReferenceImportJob
default GetReferenceImportJobResponse getReferenceImportJob(GetReferenceImportJobRequest getReferenceImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Monitors the status of a reference import job. This operation can be called after calling the
StartReferenceImportJoboperation.- Parameters:
getReferenceImportJobRequest-- Returns:
- Result of the GetReferenceImportJob operation returned by the service.
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getReferenceImportJob
default GetReferenceImportJobResponse getReferenceImportJob(Consumer<GetReferenceImportJobRequest.Builder> getReferenceImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Monitors the status of a reference import job. This operation can be called after calling the
StartReferenceImportJoboperation.
This is a convenience which creates an instance of the
GetReferenceImportJobRequest.Builderavoiding the need to create one manually viaGetReferenceImportJobRequest.builder()- Parameters:
getReferenceImportJobRequest- AConsumerthat will call methods onGetReferenceImportJobRequest.Builderto create a request.- Returns:
- Result of the GetReferenceImportJob operation returned by the service.
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getReferenceMetadata
default GetReferenceMetadataResponse getReferenceMetadata(GetReferenceMetadataRequest getReferenceMetadataRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves metadata for a reference genome. This operation returns the number of parts, part size, and MD5 of an entire file. This operation does not return tags. To retrieve the list of tags for a read set, use the
ListTagsForResourceAPI operation.- Parameters:
getReferenceMetadataRequest-- Returns:
- Result of the GetReferenceMetadata operation returned by the service.
- See Also:
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getReferenceMetadata
default GetReferenceMetadataResponse getReferenceMetadata(Consumer<GetReferenceMetadataRequest.Builder> getReferenceMetadataRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves metadata for a reference genome. This operation returns the number of parts, part size, and MD5 of an entire file. This operation does not return tags. To retrieve the list of tags for a read set, use the
ListTagsForResourceAPI operation.
This is a convenience which creates an instance of the
GetReferenceMetadataRequest.Builderavoiding the need to create one manually viaGetReferenceMetadataRequest.builder()- Parameters:
getReferenceMetadataRequest- AConsumerthat will call methods onGetReferenceMetadataRequest.Builderto create a request.- Returns:
- Result of the GetReferenceMetadata operation returned by the service.
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getReferenceStore
default GetReferenceStoreResponse getReferenceStore(GetReferenceStoreRequest getReferenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets information about a reference store.
- Parameters:
getReferenceStoreRequest-- Returns:
- Result of the GetReferenceStore operation returned by the service.
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getReferenceStore
default GetReferenceStoreResponse getReferenceStore(Consumer<GetReferenceStoreRequest.Builder> getReferenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets information about a reference store.
This is a convenience which creates an instance of the
GetReferenceStoreRequest.Builderavoiding the need to create one manually viaGetReferenceStoreRequest.builder()- Parameters:
getReferenceStoreRequest- AConsumerthat will call methods onGetReferenceStoreRequest.Builderto create a request.- Returns:
- Result of the GetReferenceStore operation returned by the service.
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getRun
default GetRunResponse getRun(GetRunRequest getRunRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets detailed information about a specific run using its ID.
Amazon Web Services HealthOmics stores a configurable number of runs, as determined by service limits, that are available to the console and API. If
GetRundoes not return the requested run, you can find all run logs in the CloudWatch logs. For more information about viewing the run logs, see CloudWatch logs in the Amazon Web Services HealthOmics User Guide.- Parameters:
getRunRequest-- Returns:
- Result of the GetRun operation returned by the service.
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getRun
default GetRunResponse getRun(Consumer<GetRunRequest.Builder> getRunRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets detailed information about a specific run using its ID.
Amazon Web Services HealthOmics stores a configurable number of runs, as determined by service limits, that are available to the console and API. If
GetRundoes not return the requested run, you can find all run logs in the CloudWatch logs. For more information about viewing the run logs, see CloudWatch logs in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
GetRunRequest.Builderavoiding the need to create one manually viaGetRunRequest.builder()- Parameters:
getRunRequest- AConsumerthat will call methods onGetRunRequest.Builderto create a request.- Returns:
- Result of the GetRun operation returned by the service.
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getRunCache
default GetRunCacheResponse getRunCache(GetRunCacheRequest getRunCacheRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves detailed information about the specified run cache using its ID.
For more information, see Call caching for Amazon Web Services HealthOmics runs in the Amazon Web Services HealthOmics User Guide.
- Parameters:
getRunCacheRequest-- Returns:
- Result of the GetRunCache operation returned by the service.
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getRunCache
default GetRunCacheResponse getRunCache(Consumer<GetRunCacheRequest.Builder> getRunCacheRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves detailed information about the specified run cache using its ID.
For more information, see Call caching for Amazon Web Services HealthOmics runs in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
GetRunCacheRequest.Builderavoiding the need to create one manually viaGetRunCacheRequest.builder()- Parameters:
getRunCacheRequest- AConsumerthat will call methods onGetRunCacheRequest.Builderto create a request.- Returns:
- Result of the GetRunCache operation returned by the service.
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getRunGroup
default GetRunGroupResponse getRunGroup(GetRunGroupRequest getRunGroupRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets information about a run group and returns its metadata.
- Parameters:
getRunGroupRequest-- Returns:
- Result of the GetRunGroup operation returned by the service.
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getRunGroup
default GetRunGroupResponse getRunGroup(Consumer<GetRunGroupRequest.Builder> getRunGroupRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets information about a run group and returns its metadata.
This is a convenience which creates an instance of the
GetRunGroupRequest.Builderavoiding the need to create one manually viaGetRunGroupRequest.builder()- Parameters:
getRunGroupRequest- AConsumerthat will call methods onGetRunGroupRequest.Builderto create a request.- Returns:
- Result of the GetRunGroup operation returned by the service.
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getRunTask
default GetRunTaskResponse getRunTask(GetRunTaskRequest getRunTaskRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets detailed information about a run task using its ID.
- Parameters:
getRunTaskRequest-- Returns:
- Result of the GetRunTask operation returned by the service.
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getRunTask
default GetRunTaskResponse getRunTask(Consumer<GetRunTaskRequest.Builder> getRunTaskRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets detailed information about a run task using its ID.
This is a convenience which creates an instance of the
GetRunTaskRequest.Builderavoiding the need to create one manually viaGetRunTaskRequest.builder()- Parameters:
getRunTaskRequest- AConsumerthat will call methods onGetRunTaskRequest.Builderto create a request.- Returns:
- Result of the GetRunTask operation returned by the service.
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getS3AccessPolicy
default GetS3AccessPolicyResponse getS3AccessPolicy(GetS3AccessPolicyRequest getS3AccessPolicyRequest) throws NotSupportedOperationException, InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves details about an access policy on a given store.
- Parameters:
getS3AccessPolicyRequest-- Returns:
- Result of the GetS3AccessPolicy operation returned by the service.
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getS3AccessPolicy
default GetS3AccessPolicyResponse getS3AccessPolicy(Consumer<GetS3AccessPolicyRequest.Builder> getS3AccessPolicyRequest) throws NotSupportedOperationException, InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves details about an access policy on a given store.
This is a convenience which creates an instance of the
GetS3AccessPolicyRequest.Builderavoiding the need to create one manually viaGetS3AccessPolicyRequest.builder()- Parameters:
getS3AccessPolicyRequest- AConsumerthat will call methods onGetS3AccessPolicyRequest.Builderto create a request.- Returns:
- Result of the GetS3AccessPolicy operation returned by the service.
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getSequenceStore
default GetSequenceStoreResponse getSequenceStore(GetSequenceStoreRequest getSequenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves metadata for a sequence store using its ID and returns it in JSON format.
- Parameters:
getSequenceStoreRequest-- Returns:
- Result of the GetSequenceStore operation returned by the service.
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getSequenceStore
default GetSequenceStoreResponse getSequenceStore(Consumer<GetSequenceStoreRequest.Builder> getSequenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves metadata for a sequence store using its ID and returns it in JSON format.
This is a convenience which creates an instance of the
GetSequenceStoreRequest.Builderavoiding the need to create one manually viaGetSequenceStoreRequest.builder()- Parameters:
getSequenceStoreRequest- AConsumerthat will call methods onGetSequenceStoreRequest.Builderto create a request.- Returns:
- Result of the GetSequenceStore operation returned by the service.
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getVariantImportJob
default GetVariantImportJobResponse getVariantImportJob(GetVariantImportJobRequest getVariantImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Gets information about a variant import job.
- Parameters:
getVariantImportJobRequest-- Returns:
- Result of the GetVariantImportJob operation returned by the service.
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getVariantImportJob
default GetVariantImportJobResponse getVariantImportJob(Consumer<GetVariantImportJobRequest.Builder> getVariantImportJobRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Gets information about a variant import job.
This is a convenience which creates an instance of the
GetVariantImportJobRequest.Builderavoiding the need to create one manually viaGetVariantImportJobRequest.builder()- Parameters:
getVariantImportJobRequest- AConsumerthat will call methods onGetVariantImportJobRequest.Builderto create a request.- Returns:
- Result of the GetVariantImportJob operation returned by the service.
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getVariantStore
default GetVariantStoreResponse getVariantStore(GetVariantStoreRequest getVariantStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Gets information about a variant store.
- Parameters:
getVariantStoreRequest-- Returns:
- Result of the GetVariantStore operation returned by the service.
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getVariantStore
default GetVariantStoreResponse getVariantStore(Consumer<GetVariantStoreRequest.Builder> getVariantStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Gets information about a variant store.
This is a convenience which creates an instance of the
GetVariantStoreRequest.Builderavoiding the need to create one manually viaGetVariantStoreRequest.builder()- Parameters:
getVariantStoreRequest- AConsumerthat will call methods onGetVariantStoreRequest.Builderto create a request.- Returns:
- Result of the GetVariantStore operation returned by the service.
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getWorkflow
default GetWorkflowResponse getWorkflow(GetWorkflowRequest getWorkflowRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets all information about a workflow using its ID.
If a workflow is shared with you, you cannot export the workflow.
For more information about your workflow status, see Verify the workflow status in the Amazon Web Services HealthOmics User Guide.
- Parameters:
getWorkflowRequest-- Returns:
- Result of the GetWorkflow operation returned by the service.
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getWorkflow
default GetWorkflowResponse getWorkflow(Consumer<GetWorkflowRequest.Builder> getWorkflowRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets all information about a workflow using its ID.
If a workflow is shared with you, you cannot export the workflow.
For more information about your workflow status, see Verify the workflow status in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
GetWorkflowRequest.Builderavoiding the need to create one manually viaGetWorkflowRequest.builder()- Parameters:
getWorkflowRequest- AConsumerthat will call methods onGetWorkflowRequest.Builderto create a request.- Returns:
- Result of the GetWorkflow operation returned by the service.
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getWorkflowVersion
default GetWorkflowVersionResponse getWorkflowVersion(GetWorkflowVersionRequest getWorkflowVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets information about a workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
- Parameters:
getWorkflowVersionRequest-- Returns:
- Result of the GetWorkflowVersion operation returned by the service.
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getWorkflowVersion
default GetWorkflowVersionResponse getWorkflowVersion(Consumer<GetWorkflowVersionRequest.Builder> getWorkflowVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Gets information about a workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
GetWorkflowVersionRequest.Builderavoiding the need to create one manually viaGetWorkflowVersionRequest.builder()- Parameters:
getWorkflowVersionRequest- AConsumerthat will call methods onGetWorkflowVersionRequest.Builderto create a request.- Returns:
- Result of the GetWorkflowVersion operation returned by the service.
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listAnnotationImportJobs
default ListAnnotationImportJobsResponse listAnnotationImportJobs(ListAnnotationImportJobsRequest listAnnotationImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of annotation import jobs.
- Parameters:
listAnnotationImportJobsRequest-- Returns:
- Result of the ListAnnotationImportJobs operation returned by the service.
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listAnnotationImportJobs
default ListAnnotationImportJobsResponse listAnnotationImportJobs(Consumer<ListAnnotationImportJobsRequest.Builder> listAnnotationImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of annotation import jobs.
This is a convenience which creates an instance of the
ListAnnotationImportJobsRequest.Builderavoiding the need to create one manually viaListAnnotationImportJobsRequest.builder()- Parameters:
listAnnotationImportJobsRequest- AConsumerthat will call methods onListAnnotationImportJobsRequest.Builderto create a request.- Returns:
- Result of the ListAnnotationImportJobs operation returned by the service.
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listAnnotationImportJobsPaginator
default ListAnnotationImportJobsIterable listAnnotationImportJobsPaginator(ListAnnotationImportJobsRequest listAnnotationImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listAnnotationImportJobs(software.amazon.awssdk.services.omics.model.ListAnnotationImportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListAnnotationImportJobsIterable responses = client.listAnnotationImportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListAnnotationImportJobsIterable responses = client .listAnnotationImportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListAnnotationImportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListAnnotationImportJobsIterable responses = client.listAnnotationImportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listAnnotationImportJobs(software.amazon.awssdk.services.omics.model.ListAnnotationImportJobsRequest)operation.- Parameters:
listAnnotationImportJobsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listAnnotationImportJobsPaginator
default ListAnnotationImportJobsIterable listAnnotationImportJobsPaginator(Consumer<ListAnnotationImportJobsRequest.Builder> listAnnotationImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listAnnotationImportJobs(software.amazon.awssdk.services.omics.model.ListAnnotationImportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListAnnotationImportJobsIterable responses = client.listAnnotationImportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListAnnotationImportJobsIterable responses = client .listAnnotationImportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListAnnotationImportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListAnnotationImportJobsIterable responses = client.listAnnotationImportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listAnnotationImportJobs(software.amazon.awssdk.services.omics.model.ListAnnotationImportJobsRequest)operation.
This is a convenience which creates an instance of the
ListAnnotationImportJobsRequest.Builderavoiding the need to create one manually viaListAnnotationImportJobsRequest.builder()- Parameters:
listAnnotationImportJobsRequest- AConsumerthat will call methods onListAnnotationImportJobsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listAnnotationStoreVersions
default ListAnnotationStoreVersionsResponse listAnnotationStoreVersions(ListAnnotationStoreVersionsRequest listAnnotationStoreVersionsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Lists the versions of an annotation store.
- Parameters:
listAnnotationStoreVersionsRequest-- Returns:
- Result of the ListAnnotationStoreVersions operation returned by the service.
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listAnnotationStoreVersions
default ListAnnotationStoreVersionsResponse listAnnotationStoreVersions(Consumer<ListAnnotationStoreVersionsRequest.Builder> listAnnotationStoreVersionsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Lists the versions of an annotation store.
This is a convenience which creates an instance of the
ListAnnotationStoreVersionsRequest.Builderavoiding the need to create one manually viaListAnnotationStoreVersionsRequest.builder()- Parameters:
listAnnotationStoreVersionsRequest- AConsumerthat will call methods onListAnnotationStoreVersionsRequest.Builderto create a request.- Returns:
- Result of the ListAnnotationStoreVersions operation returned by the service.
- See Also:
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listAnnotationStoreVersionsPaginator
default ListAnnotationStoreVersionsIterable listAnnotationStoreVersionsPaginator(ListAnnotationStoreVersionsRequest listAnnotationStoreVersionsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listAnnotationStoreVersions(software.amazon.awssdk.services.omics.model.ListAnnotationStoreVersionsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListAnnotationStoreVersionsIterable responses = client.listAnnotationStoreVersionsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListAnnotationStoreVersionsIterable responses = client .listAnnotationStoreVersionsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListAnnotationStoreVersionsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListAnnotationStoreVersionsIterable responses = client.listAnnotationStoreVersionsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listAnnotationStoreVersions(software.amazon.awssdk.services.omics.model.ListAnnotationStoreVersionsRequest)operation.- Parameters:
listAnnotationStoreVersionsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listAnnotationStoreVersionsPaginator
default ListAnnotationStoreVersionsIterable listAnnotationStoreVersionsPaginator(Consumer<ListAnnotationStoreVersionsRequest.Builder> listAnnotationStoreVersionsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listAnnotationStoreVersions(software.amazon.awssdk.services.omics.model.ListAnnotationStoreVersionsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListAnnotationStoreVersionsIterable responses = client.listAnnotationStoreVersionsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListAnnotationStoreVersionsIterable responses = client .listAnnotationStoreVersionsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListAnnotationStoreVersionsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListAnnotationStoreVersionsIterable responses = client.listAnnotationStoreVersionsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listAnnotationStoreVersions(software.amazon.awssdk.services.omics.model.ListAnnotationStoreVersionsRequest)operation.
This is a convenience which creates an instance of the
ListAnnotationStoreVersionsRequest.Builderavoiding the need to create one manually viaListAnnotationStoreVersionsRequest.builder()- Parameters:
listAnnotationStoreVersionsRequest- AConsumerthat will call methods onListAnnotationStoreVersionsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listAnnotationStores
default ListAnnotationStoresResponse listAnnotationStores(ListAnnotationStoresRequest listAnnotationStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of annotation stores.
- Parameters:
listAnnotationStoresRequest-- Returns:
- Result of the ListAnnotationStores operation returned by the service.
- See Also:
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listAnnotationStores
default ListAnnotationStoresResponse listAnnotationStores(Consumer<ListAnnotationStoresRequest.Builder> listAnnotationStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of annotation stores.
This is a convenience which creates an instance of the
ListAnnotationStoresRequest.Builderavoiding the need to create one manually viaListAnnotationStoresRequest.builder()- Parameters:
listAnnotationStoresRequest- AConsumerthat will call methods onListAnnotationStoresRequest.Builderto create a request.- Returns:
- Result of the ListAnnotationStores operation returned by the service.
- See Also:
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listAnnotationStoresPaginator
default ListAnnotationStoresIterable listAnnotationStoresPaginator(ListAnnotationStoresRequest listAnnotationStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listAnnotationStores(software.amazon.awssdk.services.omics.model.ListAnnotationStoresRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListAnnotationStoresIterable responses = client.listAnnotationStoresPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListAnnotationStoresIterable responses = client .listAnnotationStoresPaginator(request); for (software.amazon.awssdk.services.omics.model.ListAnnotationStoresResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListAnnotationStoresIterable responses = client.listAnnotationStoresPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listAnnotationStores(software.amazon.awssdk.services.omics.model.ListAnnotationStoresRequest)operation.- Parameters:
listAnnotationStoresRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listAnnotationStoresPaginator
default ListAnnotationStoresIterable listAnnotationStoresPaginator(Consumer<ListAnnotationStoresRequest.Builder> listAnnotationStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listAnnotationStores(software.amazon.awssdk.services.omics.model.ListAnnotationStoresRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListAnnotationStoresIterable responses = client.listAnnotationStoresPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListAnnotationStoresIterable responses = client .listAnnotationStoresPaginator(request); for (software.amazon.awssdk.services.omics.model.ListAnnotationStoresResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListAnnotationStoresIterable responses = client.listAnnotationStoresPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listAnnotationStores(software.amazon.awssdk.services.omics.model.ListAnnotationStoresRequest)operation.
This is a convenience which creates an instance of the
ListAnnotationStoresRequest.Builderavoiding the need to create one manually viaListAnnotationStoresRequest.builder()- Parameters:
listAnnotationStoresRequest- AConsumerthat will call methods onListAnnotationStoresRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listMultipartReadSetUploads
default ListMultipartReadSetUploadsResponse listMultipartReadSetUploads(ListMultipartReadSetUploadsRequest listMultipartReadSetUploadsRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Lists in-progress multipart read set uploads for a sequence store and returns it in a JSON formatted output. Multipart read set uploads are initiated by the
CreateMultipartReadSetUploadsAPI operation. This operation returns a response with no body when the upload is complete.- Parameters:
listMultipartReadSetUploadsRequest-- Returns:
- Result of the ListMultipartReadSetUploads operation returned by the service.
- See Also:
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listMultipartReadSetUploads
default ListMultipartReadSetUploadsResponse listMultipartReadSetUploads(Consumer<ListMultipartReadSetUploadsRequest.Builder> listMultipartReadSetUploadsRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Lists in-progress multipart read set uploads for a sequence store and returns it in a JSON formatted output. Multipart read set uploads are initiated by the
CreateMultipartReadSetUploadsAPI operation. This operation returns a response with no body when the upload is complete.
This is a convenience which creates an instance of the
ListMultipartReadSetUploadsRequest.Builderavoiding the need to create one manually viaListMultipartReadSetUploadsRequest.builder()- Parameters:
listMultipartReadSetUploadsRequest- AConsumerthat will call methods onListMultipartReadSetUploadsRequest.Builderto create a request.- Returns:
- Result of the ListMultipartReadSetUploads operation returned by the service.
- See Also:
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listMultipartReadSetUploadsPaginator
default ListMultipartReadSetUploadsIterable listMultipartReadSetUploadsPaginator(ListMultipartReadSetUploadsRequest listMultipartReadSetUploadsRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listMultipartReadSetUploads(software.amazon.awssdk.services.omics.model.ListMultipartReadSetUploadsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListMultipartReadSetUploadsIterable responses = client.listMultipartReadSetUploadsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListMultipartReadSetUploadsIterable responses = client .listMultipartReadSetUploadsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListMultipartReadSetUploadsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListMultipartReadSetUploadsIterable responses = client.listMultipartReadSetUploadsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listMultipartReadSetUploads(software.amazon.awssdk.services.omics.model.ListMultipartReadSetUploadsRequest)operation.- Parameters:
listMultipartReadSetUploadsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listMultipartReadSetUploadsPaginator
default ListMultipartReadSetUploadsIterable listMultipartReadSetUploadsPaginator(Consumer<ListMultipartReadSetUploadsRequest.Builder> listMultipartReadSetUploadsRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listMultipartReadSetUploads(software.amazon.awssdk.services.omics.model.ListMultipartReadSetUploadsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListMultipartReadSetUploadsIterable responses = client.listMultipartReadSetUploadsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListMultipartReadSetUploadsIterable responses = client .listMultipartReadSetUploadsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListMultipartReadSetUploadsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListMultipartReadSetUploadsIterable responses = client.listMultipartReadSetUploadsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listMultipartReadSetUploads(software.amazon.awssdk.services.omics.model.ListMultipartReadSetUploadsRequest)operation.
This is a convenience which creates an instance of the
ListMultipartReadSetUploadsRequest.Builderavoiding the need to create one manually viaListMultipartReadSetUploadsRequest.builder()- Parameters:
listMultipartReadSetUploadsRequest- AConsumerthat will call methods onListMultipartReadSetUploadsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReadSetActivationJobs
default ListReadSetActivationJobsResponse listReadSetActivationJobs(ListReadSetActivationJobsRequest listReadSetActivationJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of read set activation jobs and returns the metadata in a JSON formatted output. To extract metadata from a read set activation job, use the
GetReadSetActivationJobAPI operation.- Parameters:
listReadSetActivationJobsRequest-- Returns:
- Result of the ListReadSetActivationJobs operation returned by the service.
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listReadSetActivationJobs
default ListReadSetActivationJobsResponse listReadSetActivationJobs(Consumer<ListReadSetActivationJobsRequest.Builder> listReadSetActivationJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of read set activation jobs and returns the metadata in a JSON formatted output. To extract metadata from a read set activation job, use the
GetReadSetActivationJobAPI operation.
This is a convenience which creates an instance of the
ListReadSetActivationJobsRequest.Builderavoiding the need to create one manually viaListReadSetActivationJobsRequest.builder()- Parameters:
listReadSetActivationJobsRequest- AConsumerthat will call methods onListReadSetActivationJobsRequest.Builderto create a request.- Returns:
- Result of the ListReadSetActivationJobs operation returned by the service.
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listReadSetActivationJobsPaginator
default ListReadSetActivationJobsIterable listReadSetActivationJobsPaginator(ListReadSetActivationJobsRequest listReadSetActivationJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSetActivationJobs(software.amazon.awssdk.services.omics.model.ListReadSetActivationJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetActivationJobsIterable responses = client.listReadSetActivationJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetActivationJobsIterable responses = client .listReadSetActivationJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetActivationJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetActivationJobsIterable responses = client.listReadSetActivationJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSetActivationJobs(software.amazon.awssdk.services.omics.model.ListReadSetActivationJobsRequest)operation.- Parameters:
listReadSetActivationJobsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReadSetActivationJobsPaginator
default ListReadSetActivationJobsIterable listReadSetActivationJobsPaginator(Consumer<ListReadSetActivationJobsRequest.Builder> listReadSetActivationJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSetActivationJobs(software.amazon.awssdk.services.omics.model.ListReadSetActivationJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetActivationJobsIterable responses = client.listReadSetActivationJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetActivationJobsIterable responses = client .listReadSetActivationJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetActivationJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetActivationJobsIterable responses = client.listReadSetActivationJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSetActivationJobs(software.amazon.awssdk.services.omics.model.ListReadSetActivationJobsRequest)operation.
This is a convenience which creates an instance of the
ListReadSetActivationJobsRequest.Builderavoiding the need to create one manually viaListReadSetActivationJobsRequest.builder()- Parameters:
listReadSetActivationJobsRequest- AConsumerthat will call methods onListReadSetActivationJobsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReadSetExportJobs
default ListReadSetExportJobsResponse listReadSetExportJobs(ListReadSetExportJobsRequest listReadSetExportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of read set export jobs in a JSON formatted response. This API operation is used to check the status of a read set export job initiated by the
StartReadSetExportJobAPI operation.- Parameters:
listReadSetExportJobsRequest-- Returns:
- Result of the ListReadSetExportJobs operation returned by the service.
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listReadSetExportJobs
default ListReadSetExportJobsResponse listReadSetExportJobs(Consumer<ListReadSetExportJobsRequest.Builder> listReadSetExportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of read set export jobs in a JSON formatted response. This API operation is used to check the status of a read set export job initiated by the
StartReadSetExportJobAPI operation.
This is a convenience which creates an instance of the
ListReadSetExportJobsRequest.Builderavoiding the need to create one manually viaListReadSetExportJobsRequest.builder()- Parameters:
listReadSetExportJobsRequest- AConsumerthat will call methods onListReadSetExportJobsRequest.Builderto create a request.- Returns:
- Result of the ListReadSetExportJobs operation returned by the service.
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listReadSetExportJobsPaginator
default ListReadSetExportJobsIterable listReadSetExportJobsPaginator(ListReadSetExportJobsRequest listReadSetExportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSetExportJobs(software.amazon.awssdk.services.omics.model.ListReadSetExportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetExportJobsIterable responses = client.listReadSetExportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetExportJobsIterable responses = client .listReadSetExportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetExportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetExportJobsIterable responses = client.listReadSetExportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSetExportJobs(software.amazon.awssdk.services.omics.model.ListReadSetExportJobsRequest)operation.- Parameters:
listReadSetExportJobsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listReadSetExportJobsPaginator
default ListReadSetExportJobsIterable listReadSetExportJobsPaginator(Consumer<ListReadSetExportJobsRequest.Builder> listReadSetExportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSetExportJobs(software.amazon.awssdk.services.omics.model.ListReadSetExportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetExportJobsIterable responses = client.listReadSetExportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetExportJobsIterable responses = client .listReadSetExportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetExportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetExportJobsIterable responses = client.listReadSetExportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSetExportJobs(software.amazon.awssdk.services.omics.model.ListReadSetExportJobsRequest)operation.
This is a convenience which creates an instance of the
ListReadSetExportJobsRequest.Builderavoiding the need to create one manually viaListReadSetExportJobsRequest.builder()- Parameters:
listReadSetExportJobsRequest- AConsumerthat will call methods onListReadSetExportJobsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReadSetImportJobs
default ListReadSetImportJobsResponse listReadSetImportJobs(ListReadSetImportJobsRequest listReadSetImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of read set import jobs and returns the data in JSON format.
- Parameters:
listReadSetImportJobsRequest-- Returns:
- Result of the ListReadSetImportJobs operation returned by the service.
- See Also:
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listReadSetImportJobs
default ListReadSetImportJobsResponse listReadSetImportJobs(Consumer<ListReadSetImportJobsRequest.Builder> listReadSetImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of read set import jobs and returns the data in JSON format.
This is a convenience which creates an instance of the
ListReadSetImportJobsRequest.Builderavoiding the need to create one manually viaListReadSetImportJobsRequest.builder()- Parameters:
listReadSetImportJobsRequest- AConsumerthat will call methods onListReadSetImportJobsRequest.Builderto create a request.- Returns:
- Result of the ListReadSetImportJobs operation returned by the service.
- See Also:
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listReadSetImportJobsPaginator
default ListReadSetImportJobsIterable listReadSetImportJobsPaginator(ListReadSetImportJobsRequest listReadSetImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSetImportJobs(software.amazon.awssdk.services.omics.model.ListReadSetImportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetImportJobsIterable responses = client.listReadSetImportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetImportJobsIterable responses = client .listReadSetImportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetImportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetImportJobsIterable responses = client.listReadSetImportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSetImportJobs(software.amazon.awssdk.services.omics.model.ListReadSetImportJobsRequest)operation.- Parameters:
listReadSetImportJobsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listReadSetImportJobsPaginator
default ListReadSetImportJobsIterable listReadSetImportJobsPaginator(Consumer<ListReadSetImportJobsRequest.Builder> listReadSetImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSetImportJobs(software.amazon.awssdk.services.omics.model.ListReadSetImportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetImportJobsIterable responses = client.listReadSetImportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetImportJobsIterable responses = client .listReadSetImportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetImportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetImportJobsIterable responses = client.listReadSetImportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSetImportJobs(software.amazon.awssdk.services.omics.model.ListReadSetImportJobsRequest)operation.
This is a convenience which creates an instance of the
ListReadSetImportJobsRequest.Builderavoiding the need to create one manually viaListReadSetImportJobsRequest.builder()- Parameters:
listReadSetImportJobsRequest- AConsumerthat will call methods onListReadSetImportJobsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReadSetUploadParts
default ListReadSetUploadPartsResponse listReadSetUploadParts(ListReadSetUploadPartsRequest listReadSetUploadPartsRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Lists all parts in a multipart read set upload for a sequence store and returns the metadata in a JSON formatted output.
- Parameters:
listReadSetUploadPartsRequest-- Returns:
- Result of the ListReadSetUploadParts operation returned by the service.
- See Also:
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listReadSetUploadParts
default ListReadSetUploadPartsResponse listReadSetUploadParts(Consumer<ListReadSetUploadPartsRequest.Builder> listReadSetUploadPartsRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Lists all parts in a multipart read set upload for a sequence store and returns the metadata in a JSON formatted output.
This is a convenience which creates an instance of the
ListReadSetUploadPartsRequest.Builderavoiding the need to create one manually viaListReadSetUploadPartsRequest.builder()- Parameters:
listReadSetUploadPartsRequest- AConsumerthat will call methods onListReadSetUploadPartsRequest.Builderto create a request.- Returns:
- Result of the ListReadSetUploadParts operation returned by the service.
- See Also:
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listReadSetUploadPartsPaginator
default ListReadSetUploadPartsIterable listReadSetUploadPartsPaginator(ListReadSetUploadPartsRequest listReadSetUploadPartsRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSetUploadParts(software.amazon.awssdk.services.omics.model.ListReadSetUploadPartsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetUploadPartsIterable responses = client.listReadSetUploadPartsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetUploadPartsIterable responses = client .listReadSetUploadPartsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetUploadPartsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetUploadPartsIterable responses = client.listReadSetUploadPartsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSetUploadParts(software.amazon.awssdk.services.omics.model.ListReadSetUploadPartsRequest)operation.- Parameters:
listReadSetUploadPartsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listReadSetUploadPartsPaginator
default ListReadSetUploadPartsIterable listReadSetUploadPartsPaginator(Consumer<ListReadSetUploadPartsRequest.Builder> listReadSetUploadPartsRequest) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSetUploadParts(software.amazon.awssdk.services.omics.model.ListReadSetUploadPartsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetUploadPartsIterable responses = client.listReadSetUploadPartsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetUploadPartsIterable responses = client .listReadSetUploadPartsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetUploadPartsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetUploadPartsIterable responses = client.listReadSetUploadPartsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSetUploadParts(software.amazon.awssdk.services.omics.model.ListReadSetUploadPartsRequest)operation.
This is a convenience which creates an instance of the
ListReadSetUploadPartsRequest.Builderavoiding the need to create one manually viaListReadSetUploadPartsRequest.builder()- Parameters:
listReadSetUploadPartsRequest- AConsumerthat will call methods onListReadSetUploadPartsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listReadSets
default ListReadSetsResponse listReadSets(ListReadSetsRequest listReadSetsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of read sets from a sequence store ID and returns the metadata in JSON format.
- Parameters:
listReadSetsRequest-- Returns:
- Result of the ListReadSets operation returned by the service.
- See Also:
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listReadSets
default ListReadSetsResponse listReadSets(Consumer<ListReadSetsRequest.Builder> listReadSetsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of read sets from a sequence store ID and returns the metadata in JSON format.
This is a convenience which creates an instance of the
ListReadSetsRequest.Builderavoiding the need to create one manually viaListReadSetsRequest.builder()- Parameters:
listReadSetsRequest- AConsumerthat will call methods onListReadSetsRequest.Builderto create a request.- Returns:
- Result of the ListReadSets operation returned by the service.
- See Also:
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listReadSetsPaginator
default ListReadSetsIterable listReadSetsPaginator(ListReadSetsRequest listReadSetsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSets(software.amazon.awssdk.services.omics.model.ListReadSetsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetsIterable responses = client.listReadSetsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetsIterable responses = client.listReadSetsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetsIterable responses = client.listReadSetsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSets(software.amazon.awssdk.services.omics.model.ListReadSetsRequest)operation.- Parameters:
listReadSetsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listReadSetsPaginator
default ListReadSetsIterable listReadSetsPaginator(Consumer<ListReadSetsRequest.Builder> listReadSetsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReadSets(software.amazon.awssdk.services.omics.model.ListReadSetsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReadSetsIterable responses = client.listReadSetsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReadSetsIterable responses = client.listReadSetsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReadSetsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReadSetsIterable responses = client.listReadSetsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReadSets(software.amazon.awssdk.services.omics.model.ListReadSetsRequest)operation.
This is a convenience which creates an instance of the
ListReadSetsRequest.Builderavoiding the need to create one manually viaListReadSetsRequest.builder()- Parameters:
listReadSetsRequest- AConsumerthat will call methods onListReadSetsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listReferenceImportJobs
default ListReferenceImportJobsResponse listReferenceImportJobs(ListReferenceImportJobsRequest listReferenceImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves the metadata of one or more reference import jobs for a reference store.
- Parameters:
listReferenceImportJobsRequest-- Returns:
- Result of the ListReferenceImportJobs operation returned by the service.
- See Also:
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listReferenceImportJobs
default ListReferenceImportJobsResponse listReferenceImportJobs(Consumer<ListReferenceImportJobsRequest.Builder> listReferenceImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves the metadata of one or more reference import jobs for a reference store.
This is a convenience which creates an instance of the
ListReferenceImportJobsRequest.Builderavoiding the need to create one manually viaListReferenceImportJobsRequest.builder()- Parameters:
listReferenceImportJobsRequest- AConsumerthat will call methods onListReferenceImportJobsRequest.Builderto create a request.- Returns:
- Result of the ListReferenceImportJobs operation returned by the service.
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listReferenceImportJobsPaginator
default ListReferenceImportJobsIterable listReferenceImportJobsPaginator(ListReferenceImportJobsRequest listReferenceImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReferenceImportJobs(software.amazon.awssdk.services.omics.model.ListReferenceImportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReferenceImportJobsIterable responses = client.listReferenceImportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReferenceImportJobsIterable responses = client .listReferenceImportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReferenceImportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReferenceImportJobsIterable responses = client.listReferenceImportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReferenceImportJobs(software.amazon.awssdk.services.omics.model.ListReferenceImportJobsRequest)operation.- Parameters:
listReferenceImportJobsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReferenceImportJobsPaginator
default ListReferenceImportJobsIterable listReferenceImportJobsPaginator(Consumer<ListReferenceImportJobsRequest.Builder> listReferenceImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReferenceImportJobs(software.amazon.awssdk.services.omics.model.ListReferenceImportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReferenceImportJobsIterable responses = client.listReferenceImportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReferenceImportJobsIterable responses = client .listReferenceImportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReferenceImportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReferenceImportJobsIterable responses = client.listReferenceImportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReferenceImportJobs(software.amazon.awssdk.services.omics.model.ListReferenceImportJobsRequest)operation.
This is a convenience which creates an instance of the
ListReferenceImportJobsRequest.Builderavoiding the need to create one manually viaListReferenceImportJobsRequest.builder()- Parameters:
listReferenceImportJobsRequest- AConsumerthat will call methods onListReferenceImportJobsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReferenceStores
default ListReferenceStoresResponse listReferenceStores(ListReferenceStoresRequest listReferenceStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of reference stores linked to your account and returns their metadata in JSON format.
For more information, see Creating a reference store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
listReferenceStoresRequest-- Returns:
- Result of the ListReferenceStores operation returned by the service.
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listReferenceStores
default ListReferenceStoresResponse listReferenceStores(Consumer<ListReferenceStoresRequest.Builder> listReferenceStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of reference stores linked to your account and returns their metadata in JSON format.
For more information, see Creating a reference store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
ListReferenceStoresRequest.Builderavoiding the need to create one manually viaListReferenceStoresRequest.builder()- Parameters:
listReferenceStoresRequest- AConsumerthat will call methods onListReferenceStoresRequest.Builderto create a request.- Returns:
- Result of the ListReferenceStores operation returned by the service.
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listReferenceStoresPaginator
default ListReferenceStoresIterable listReferenceStoresPaginator(ListReferenceStoresRequest listReferenceStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReferenceStores(software.amazon.awssdk.services.omics.model.ListReferenceStoresRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReferenceStoresIterable responses = client.listReferenceStoresPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReferenceStoresIterable responses = client .listReferenceStoresPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReferenceStoresResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReferenceStoresIterable responses = client.listReferenceStoresPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReferenceStores(software.amazon.awssdk.services.omics.model.ListReferenceStoresRequest)operation.- Parameters:
listReferenceStoresRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReferenceStoresPaginator
default ListReferenceStoresIterable listReferenceStoresPaginator(Consumer<ListReferenceStoresRequest.Builder> listReferenceStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReferenceStores(software.amazon.awssdk.services.omics.model.ListReferenceStoresRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReferenceStoresIterable responses = client.listReferenceStoresPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReferenceStoresIterable responses = client .listReferenceStoresPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReferenceStoresResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReferenceStoresIterable responses = client.listReferenceStoresPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReferenceStores(software.amazon.awssdk.services.omics.model.ListReferenceStoresRequest)operation.
This is a convenience which creates an instance of the
ListReferenceStoresRequest.Builderavoiding the need to create one manually viaListReferenceStoresRequest.builder()- Parameters:
listReferenceStoresRequest- AConsumerthat will call methods onListReferenceStoresRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReferences
default ListReferencesResponse listReferences(ListReferencesRequest listReferencesRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves the metadata of one or more reference genomes in a reference store.
For more information, see Creating a reference store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
listReferencesRequest-- Returns:
- Result of the ListReferences operation returned by the service.
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listReferences
default ListReferencesResponse listReferences(Consumer<ListReferencesRequest.Builder> listReferencesRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves the metadata of one or more reference genomes in a reference store.
For more information, see Creating a reference store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
ListReferencesRequest.Builderavoiding the need to create one manually viaListReferencesRequest.builder()- Parameters:
listReferencesRequest- AConsumerthat will call methods onListReferencesRequest.Builderto create a request.- Returns:
- Result of the ListReferences operation returned by the service.
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listReferencesPaginator
default ListReferencesIterable listReferencesPaginator(ListReferencesRequest listReferencesRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReferences(software.amazon.awssdk.services.omics.model.ListReferencesRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReferencesIterable responses = client.listReferencesPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReferencesIterable responses = client.listReferencesPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReferencesResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReferencesIterable responses = client.listReferencesPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReferences(software.amazon.awssdk.services.omics.model.ListReferencesRequest)operation.- Parameters:
listReferencesRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listReferencesPaginator
default ListReferencesIterable listReferencesPaginator(Consumer<ListReferencesRequest.Builder> listReferencesRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listReferences(software.amazon.awssdk.services.omics.model.ListReferencesRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListReferencesIterable responses = client.listReferencesPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListReferencesIterable responses = client.listReferencesPaginator(request); for (software.amazon.awssdk.services.omics.model.ListReferencesResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListReferencesIterable responses = client.listReferencesPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listReferences(software.amazon.awssdk.services.omics.model.ListReferencesRequest)operation.
This is a convenience which creates an instance of the
ListReferencesRequest.Builderavoiding the need to create one manually viaListReferencesRequest.builder()- Parameters:
listReferencesRequest- AConsumerthat will call methods onListReferencesRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listRunCaches
default ListRunCachesResponse listRunCaches(ListRunCachesRequest listRunCachesRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of your run caches and the metadata for each cache.
- Parameters:
listRunCachesRequest-- Returns:
- Result of the ListRunCaches operation returned by the service.
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listRunCaches
default ListRunCachesResponse listRunCaches(Consumer<ListRunCachesRequest.Builder> listRunCachesRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of your run caches and the metadata for each cache.
This is a convenience which creates an instance of the
ListRunCachesRequest.Builderavoiding the need to create one manually viaListRunCachesRequest.builder()- Parameters:
listRunCachesRequest- AConsumerthat will call methods onListRunCachesRequest.Builderto create a request.- Returns:
- Result of the ListRunCaches operation returned by the service.
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listRunCachesPaginator
default ListRunCachesIterable listRunCachesPaginator(ListRunCachesRequest listRunCachesRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listRunCaches(software.amazon.awssdk.services.omics.model.ListRunCachesRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListRunCachesIterable responses = client.listRunCachesPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListRunCachesIterable responses = client.listRunCachesPaginator(request); for (software.amazon.awssdk.services.omics.model.ListRunCachesResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListRunCachesIterable responses = client.listRunCachesPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listRunCaches(software.amazon.awssdk.services.omics.model.ListRunCachesRequest)operation.- Parameters:
listRunCachesRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listRunCachesPaginator
default ListRunCachesIterable listRunCachesPaginator(Consumer<ListRunCachesRequest.Builder> listRunCachesRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listRunCaches(software.amazon.awssdk.services.omics.model.ListRunCachesRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListRunCachesIterable responses = client.listRunCachesPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListRunCachesIterable responses = client.listRunCachesPaginator(request); for (software.amazon.awssdk.services.omics.model.ListRunCachesResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListRunCachesIterable responses = client.listRunCachesPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listRunCaches(software.amazon.awssdk.services.omics.model.ListRunCachesRequest)operation.
This is a convenience which creates an instance of the
ListRunCachesRequest.Builderavoiding the need to create one manually viaListRunCachesRequest.builder()- Parameters:
listRunCachesRequest- AConsumerthat will call methods onListRunCachesRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listRunGroups
default ListRunGroupsResponse listRunGroups(ListRunGroupsRequest listRunGroupsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of all run groups and returns the metadata for each run group.
- Parameters:
listRunGroupsRequest-- Returns:
- Result of the ListRunGroups operation returned by the service.
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listRunGroups
default ListRunGroupsResponse listRunGroups(Consumer<ListRunGroupsRequest.Builder> listRunGroupsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of all run groups and returns the metadata for each run group.
This is a convenience which creates an instance of the
ListRunGroupsRequest.Builderavoiding the need to create one manually viaListRunGroupsRequest.builder()- Parameters:
listRunGroupsRequest- AConsumerthat will call methods onListRunGroupsRequest.Builderto create a request.- Returns:
- Result of the ListRunGroups operation returned by the service.
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listRunGroupsPaginator
default ListRunGroupsIterable listRunGroupsPaginator(ListRunGroupsRequest listRunGroupsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listRunGroups(software.amazon.awssdk.services.omics.model.ListRunGroupsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListRunGroupsIterable responses = client.listRunGroupsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListRunGroupsIterable responses = client.listRunGroupsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListRunGroupsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListRunGroupsIterable responses = client.listRunGroupsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listRunGroups(software.amazon.awssdk.services.omics.model.ListRunGroupsRequest)operation.- Parameters:
listRunGroupsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listRunGroupsPaginator
default ListRunGroupsIterable listRunGroupsPaginator(Consumer<ListRunGroupsRequest.Builder> listRunGroupsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listRunGroups(software.amazon.awssdk.services.omics.model.ListRunGroupsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListRunGroupsIterable responses = client.listRunGroupsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListRunGroupsIterable responses = client.listRunGroupsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListRunGroupsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListRunGroupsIterable responses = client.listRunGroupsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listRunGroups(software.amazon.awssdk.services.omics.model.ListRunGroupsRequest)operation.
This is a convenience which creates an instance of the
ListRunGroupsRequest.Builderavoiding the need to create one manually viaListRunGroupsRequest.builder()- Parameters:
listRunGroupsRequest- AConsumerthat will call methods onListRunGroupsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listRunTasks
default ListRunTasksResponse listRunTasks(ListRunTasksRequest listRunTasksRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Returns a list of tasks and status information within their specified run. Use this operation to monitor runs and to identify which specific tasks have failed.
- Parameters:
listRunTasksRequest-- Returns:
- Result of the ListRunTasks operation returned by the service.
- See Also:
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listRunTasks
default ListRunTasksResponse listRunTasks(Consumer<ListRunTasksRequest.Builder> listRunTasksRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Returns a list of tasks and status information within their specified run. Use this operation to monitor runs and to identify which specific tasks have failed.
This is a convenience which creates an instance of the
ListRunTasksRequest.Builderavoiding the need to create one manually viaListRunTasksRequest.builder()- Parameters:
listRunTasksRequest- AConsumerthat will call methods onListRunTasksRequest.Builderto create a request.- Returns:
- Result of the ListRunTasks operation returned by the service.
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listRunTasksPaginator
default ListRunTasksIterable listRunTasksPaginator(ListRunTasksRequest listRunTasksRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listRunTasks(software.amazon.awssdk.services.omics.model.ListRunTasksRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListRunTasksIterable responses = client.listRunTasksPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListRunTasksIterable responses = client.listRunTasksPaginator(request); for (software.amazon.awssdk.services.omics.model.ListRunTasksResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListRunTasksIterable responses = client.listRunTasksPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listRunTasks(software.amazon.awssdk.services.omics.model.ListRunTasksRequest)operation.- Parameters:
listRunTasksRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listRunTasksPaginator
default ListRunTasksIterable listRunTasksPaginator(Consumer<ListRunTasksRequest.Builder> listRunTasksRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listRunTasks(software.amazon.awssdk.services.omics.model.ListRunTasksRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListRunTasksIterable responses = client.listRunTasksPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListRunTasksIterable responses = client.listRunTasksPaginator(request); for (software.amazon.awssdk.services.omics.model.ListRunTasksResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListRunTasksIterable responses = client.listRunTasksPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listRunTasks(software.amazon.awssdk.services.omics.model.ListRunTasksRequest)operation.
This is a convenience which creates an instance of the
ListRunTasksRequest.Builderavoiding the need to create one manually viaListRunTasksRequest.builder()- Parameters:
listRunTasksRequest- AConsumerthat will call methods onListRunTasksRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listRuns
default ListRunsResponse listRuns(ListRunsRequest listRunsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of runs and returns each run's metadata and status.
Amazon Web Services HealthOmics stores a configurable number of runs, as determined by service limits, that are available to the console and API. If the
ListRunsresponse doesn't include specific runs that you expected, you can find all run logs in the CloudWatch logs. For more information about viewing the run logs, see CloudWatch logs in the Amazon Web Services HealthOmics User Guide.- Parameters:
listRunsRequest-- Returns:
- Result of the ListRuns operation returned by the service.
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listRuns
default ListRunsResponse listRuns(Consumer<ListRunsRequest.Builder> listRunsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of runs and returns each run's metadata and status.
Amazon Web Services HealthOmics stores a configurable number of runs, as determined by service limits, that are available to the console and API. If the
ListRunsresponse doesn't include specific runs that you expected, you can find all run logs in the CloudWatch logs. For more information about viewing the run logs, see CloudWatch logs in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
ListRunsRequest.Builderavoiding the need to create one manually viaListRunsRequest.builder()- Parameters:
listRunsRequest- AConsumerthat will call methods onListRunsRequest.Builderto create a request.- Returns:
- Result of the ListRuns operation returned by the service.
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listRunsPaginator
default ListRunsIterable listRunsPaginator(ListRunsRequest listRunsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listRuns(software.amazon.awssdk.services.omics.model.ListRunsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListRunsIterable responses = client.listRunsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListRunsIterable responses = client.listRunsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListRunsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListRunsIterable responses = client.listRunsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listRuns(software.amazon.awssdk.services.omics.model.ListRunsRequest)operation.- Parameters:
listRunsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listRunsPaginator
default ListRunsIterable listRunsPaginator(Consumer<ListRunsRequest.Builder> listRunsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listRuns(software.amazon.awssdk.services.omics.model.ListRunsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListRunsIterable responses = client.listRunsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListRunsIterable responses = client.listRunsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListRunsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListRunsIterable responses = client.listRunsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listRuns(software.amazon.awssdk.services.omics.model.ListRunsRequest)operation.
This is a convenience which creates an instance of the
ListRunsRequest.Builderavoiding the need to create one manually viaListRunsRequest.builder()- Parameters:
listRunsRequest- AConsumerthat will call methods onListRunsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listSequenceStores
default ListSequenceStoresResponse listSequenceStores(ListSequenceStoresRequest listSequenceStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of sequence stores and returns each sequence store's metadata.
For more information, see Creating a HealthOmics sequence store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
listSequenceStoresRequest-- Returns:
- Result of the ListSequenceStores operation returned by the service.
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listSequenceStores
default ListSequenceStoresResponse listSequenceStores(Consumer<ListSequenceStoresRequest.Builder> listSequenceStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of sequence stores and returns each sequence store's metadata.
For more information, see Creating a HealthOmics sequence store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
ListSequenceStoresRequest.Builderavoiding the need to create one manually viaListSequenceStoresRequest.builder()- Parameters:
listSequenceStoresRequest- AConsumerthat will call methods onListSequenceStoresRequest.Builderto create a request.- Returns:
- Result of the ListSequenceStores operation returned by the service.
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listSequenceStoresPaginator
default ListSequenceStoresIterable listSequenceStoresPaginator(ListSequenceStoresRequest listSequenceStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listSequenceStores(software.amazon.awssdk.services.omics.model.ListSequenceStoresRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListSequenceStoresIterable responses = client.listSequenceStoresPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListSequenceStoresIterable responses = client .listSequenceStoresPaginator(request); for (software.amazon.awssdk.services.omics.model.ListSequenceStoresResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListSequenceStoresIterable responses = client.listSequenceStoresPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listSequenceStores(software.amazon.awssdk.services.omics.model.ListSequenceStoresRequest)operation.- Parameters:
listSequenceStoresRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listSequenceStoresPaginator
default ListSequenceStoresIterable listSequenceStoresPaginator(Consumer<ListSequenceStoresRequest.Builder> listSequenceStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listSequenceStores(software.amazon.awssdk.services.omics.model.ListSequenceStoresRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListSequenceStoresIterable responses = client.listSequenceStoresPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListSequenceStoresIterable responses = client .listSequenceStoresPaginator(request); for (software.amazon.awssdk.services.omics.model.ListSequenceStoresResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListSequenceStoresIterable responses = client.listSequenceStoresPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listSequenceStores(software.amazon.awssdk.services.omics.model.ListSequenceStoresRequest)operation.
This is a convenience which creates an instance of the
ListSequenceStoresRequest.Builderavoiding the need to create one manually viaListSequenceStoresRequest.builder()- Parameters:
listSequenceStoresRequest- AConsumerthat will call methods onListSequenceStoresRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listTagsForResource
default ListTagsForResourceResponse listTagsForResource(ListTagsForResourceRequest listTagsForResourceRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of tags for a resource.
- Parameters:
listTagsForResourceRequest-- Returns:
- Result of the ListTagsForResource operation returned by the service.
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listTagsForResource
default ListTagsForResourceResponse listTagsForResource(Consumer<ListTagsForResourceRequest.Builder> listTagsForResourceRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of tags for a resource.
This is a convenience which creates an instance of the
ListTagsForResourceRequest.Builderavoiding the need to create one manually viaListTagsForResourceRequest.builder()- Parameters:
listTagsForResourceRequest- AConsumerthat will call methods onListTagsForResourceRequest.Builderto create a request.- Returns:
- Result of the ListTagsForResource operation returned by the service.
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listVariantImportJobs
default ListVariantImportJobsResponse listVariantImportJobs(ListVariantImportJobsRequest listVariantImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of variant import jobs.
- Parameters:
listVariantImportJobsRequest-- Returns:
- Result of the ListVariantImportJobs operation returned by the service.
- See Also:
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listVariantImportJobs
default ListVariantImportJobsResponse listVariantImportJobs(Consumer<ListVariantImportJobsRequest.Builder> listVariantImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of variant import jobs.
This is a convenience which creates an instance of the
ListVariantImportJobsRequest.Builderavoiding the need to create one manually viaListVariantImportJobsRequest.builder()- Parameters:
listVariantImportJobsRequest- AConsumerthat will call methods onListVariantImportJobsRequest.Builderto create a request.- Returns:
- Result of the ListVariantImportJobs operation returned by the service.
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listVariantImportJobsPaginator
default ListVariantImportJobsIterable listVariantImportJobsPaginator(ListVariantImportJobsRequest listVariantImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listVariantImportJobs(software.amazon.awssdk.services.omics.model.ListVariantImportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListVariantImportJobsIterable responses = client.listVariantImportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListVariantImportJobsIterable responses = client .listVariantImportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListVariantImportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListVariantImportJobsIterable responses = client.listVariantImportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listVariantImportJobs(software.amazon.awssdk.services.omics.model.ListVariantImportJobsRequest)operation.- Parameters:
listVariantImportJobsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listVariantImportJobsPaginator
default ListVariantImportJobsIterable listVariantImportJobsPaginator(Consumer<ListVariantImportJobsRequest.Builder> listVariantImportJobsRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listVariantImportJobs(software.amazon.awssdk.services.omics.model.ListVariantImportJobsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListVariantImportJobsIterable responses = client.listVariantImportJobsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListVariantImportJobsIterable responses = client .listVariantImportJobsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListVariantImportJobsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListVariantImportJobsIterable responses = client.listVariantImportJobsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listVariantImportJobs(software.amazon.awssdk.services.omics.model.ListVariantImportJobsRequest)operation.
This is a convenience which creates an instance of the
ListVariantImportJobsRequest.Builderavoiding the need to create one manually viaListVariantImportJobsRequest.builder()- Parameters:
listVariantImportJobsRequest- AConsumerthat will call methods onListVariantImportJobsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listVariantStores
default ListVariantStoresResponse listVariantStores(ListVariantStoresRequest listVariantStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of variant stores.
- Parameters:
listVariantStoresRequest-- Returns:
- Result of the ListVariantStores operation returned by the service.
- See Also:
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listVariantStores
default ListVariantStoresResponse listVariantStores(Consumer<ListVariantStoresRequest.Builder> listVariantStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of variant stores.
This is a convenience which creates an instance of the
ListVariantStoresRequest.Builderavoiding the need to create one manually viaListVariantStoresRequest.builder()- Parameters:
listVariantStoresRequest- AConsumerthat will call methods onListVariantStoresRequest.Builderto create a request.- Returns:
- Result of the ListVariantStores operation returned by the service.
- See Also:
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listVariantStoresPaginator
default ListVariantStoresIterable listVariantStoresPaginator(ListVariantStoresRequest listVariantStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listVariantStores(software.amazon.awssdk.services.omics.model.ListVariantStoresRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListVariantStoresIterable responses = client.listVariantStoresPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListVariantStoresIterable responses = client .listVariantStoresPaginator(request); for (software.amazon.awssdk.services.omics.model.ListVariantStoresResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListVariantStoresIterable responses = client.listVariantStoresPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listVariantStores(software.amazon.awssdk.services.omics.model.ListVariantStoresRequest)operation.- Parameters:
listVariantStoresRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listVariantStoresPaginator
default ListVariantStoresIterable listVariantStoresPaginator(Consumer<ListVariantStoresRequest.Builder> listVariantStoresRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listVariantStores(software.amazon.awssdk.services.omics.model.ListVariantStoresRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListVariantStoresIterable responses = client.listVariantStoresPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListVariantStoresIterable responses = client .listVariantStoresPaginator(request); for (software.amazon.awssdk.services.omics.model.ListVariantStoresResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListVariantStoresIterable responses = client.listVariantStoresPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listVariantStores(software.amazon.awssdk.services.omics.model.ListVariantStoresRequest)operation.
This is a convenience which creates an instance of the
ListVariantStoresRequest.Builderavoiding the need to create one manually viaListVariantStoresRequest.builder()- Parameters:
listVariantStoresRequest- AConsumerthat will call methods onListVariantStoresRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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listWorkflowVersions
default ListWorkflowVersionsResponse listWorkflowVersions(ListWorkflowVersionsRequest listWorkflowVersionsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Lists the workflow versions for the specified workflow. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
- Parameters:
listWorkflowVersionsRequest-- Returns:
- Result of the ListWorkflowVersions operation returned by the service.
- See Also:
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listWorkflowVersions
default ListWorkflowVersionsResponse listWorkflowVersions(Consumer<ListWorkflowVersionsRequest.Builder> listWorkflowVersionsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Lists the workflow versions for the specified workflow. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
ListWorkflowVersionsRequest.Builderavoiding the need to create one manually viaListWorkflowVersionsRequest.builder()- Parameters:
listWorkflowVersionsRequest- AConsumerthat will call methods onListWorkflowVersionsRequest.Builderto create a request.- Returns:
- Result of the ListWorkflowVersions operation returned by the service.
- See Also:
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listWorkflowVersionsPaginator
default ListWorkflowVersionsIterable listWorkflowVersionsPaginator(ListWorkflowVersionsRequest listWorkflowVersionsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listWorkflowVersions(software.amazon.awssdk.services.omics.model.ListWorkflowVersionsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListWorkflowVersionsIterable responses = client.listWorkflowVersionsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListWorkflowVersionsIterable responses = client .listWorkflowVersionsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListWorkflowVersionsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListWorkflowVersionsIterable responses = client.listWorkflowVersionsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listWorkflowVersions(software.amazon.awssdk.services.omics.model.ListWorkflowVersionsRequest)operation.- Parameters:
listWorkflowVersionsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listWorkflowVersionsPaginator
default ListWorkflowVersionsIterable listWorkflowVersionsPaginator(Consumer<ListWorkflowVersionsRequest.Builder> listWorkflowVersionsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listWorkflowVersions(software.amazon.awssdk.services.omics.model.ListWorkflowVersionsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListWorkflowVersionsIterable responses = client.listWorkflowVersionsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListWorkflowVersionsIterable responses = client .listWorkflowVersionsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListWorkflowVersionsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListWorkflowVersionsIterable responses = client.listWorkflowVersionsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listWorkflowVersions(software.amazon.awssdk.services.omics.model.ListWorkflowVersionsRequest)operation.
This is a convenience which creates an instance of the
ListWorkflowVersionsRequest.Builderavoiding the need to create one manually viaListWorkflowVersionsRequest.builder()- Parameters:
listWorkflowVersionsRequest- AConsumerthat will call methods onListWorkflowVersionsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listWorkflows
default ListWorkflowsResponse listWorkflows(ListWorkflowsRequest listWorkflowsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of existing workflows. You can filter for specific workflows by their name and type. Using the type parameter, specify
PRIVATEto retrieve a list of private workflows or specifyREADY2RUNfor a list of all Ready2Run workflows. If you do not specify the type of workflow, this operation returns a list of existing workflows.- Parameters:
listWorkflowsRequest-- Returns:
- Result of the ListWorkflows operation returned by the service.
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listWorkflows
default ListWorkflowsResponse listWorkflows(Consumer<ListWorkflowsRequest.Builder> listWorkflowsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Retrieves a list of existing workflows. You can filter for specific workflows by their name and type. Using the type parameter, specify
PRIVATEto retrieve a list of private workflows or specifyREADY2RUNfor a list of all Ready2Run workflows. If you do not specify the type of workflow, this operation returns a list of existing workflows.
This is a convenience which creates an instance of the
ListWorkflowsRequest.Builderavoiding the need to create one manually viaListWorkflowsRequest.builder()- Parameters:
listWorkflowsRequest- AConsumerthat will call methods onListWorkflowsRequest.Builderto create a request.- Returns:
- Result of the ListWorkflows operation returned by the service.
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listWorkflowsPaginator
default ListWorkflowsIterable listWorkflowsPaginator(ListWorkflowsRequest listWorkflowsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listWorkflows(software.amazon.awssdk.services.omics.model.ListWorkflowsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListWorkflowsIterable responses = client.listWorkflowsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListWorkflowsIterable responses = client.listWorkflowsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListWorkflowsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListWorkflowsIterable responses = client.listWorkflowsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listWorkflows(software.amazon.awssdk.services.omics.model.ListWorkflowsRequest)operation.- Parameters:
listWorkflowsRequest-- Returns:
- A custom iterable that can be used to iterate through all the response pages.
- See Also:
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listWorkflowsPaginator
default ListWorkflowsIterable listWorkflowsPaginator(Consumer<ListWorkflowsRequest.Builder> listWorkflowsRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException This is a variant of
listWorkflows(software.amazon.awssdk.services.omics.model.ListWorkflowsRequest)operation. The return type is a custom iterable that can be used to iterate through all the pages. SDK will internally handle making service calls for you.When this operation is called, a custom iterable is returned but no service calls are made yet. So there is no guarantee that the request is valid. As you iterate through the iterable, SDK will start lazily loading response pages by making service calls until there are no pages left or your iteration stops. If there are errors in your request, you will see the failures only after you start iterating through the iterable.
The following are few ways to iterate through the response pages:
1) Using a Stream
2) Using For loopsoftware.amazon.awssdk.services.omics.paginators.ListWorkflowsIterable responses = client.listWorkflowsPaginator(request); responses.stream().forEach(....);{ @code software.amazon.awssdk.services.omics.paginators.ListWorkflowsIterable responses = client.listWorkflowsPaginator(request); for (software.amazon.awssdk.services.omics.model.ListWorkflowsResponse response : responses) { // do something; } }3) Use iterator directlysoftware.amazon.awssdk.services.omics.paginators.ListWorkflowsIterable responses = client.listWorkflowsPaginator(request); responses.iterator().forEachRemaining(....);Please notice that the configuration of maxResults won't limit the number of results you get with the paginator. It only limits the number of results in each page.
Note: If you prefer to have control on service calls, use the
listWorkflows(software.amazon.awssdk.services.omics.model.ListWorkflowsRequest)operation.
This is a convenience which creates an instance of the
ListWorkflowsRequest.Builderavoiding the need to create one manually viaListWorkflowsRequest.builder()- Parameters:
listWorkflowsRequest- AConsumerthat will call methods onListWorkflowsRequest.Builderto create a request.- Returns:
- A custom iterable that can be used to iterate through all the response pages.
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putS3AccessPolicy
default PutS3AccessPolicyResponse putS3AccessPolicy(PutS3AccessPolicyRequest putS3AccessPolicyRequest) throws NotSupportedOperationException, InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Adds an access policy to the specified store.
- Parameters:
putS3AccessPolicyRequest-- Returns:
- Result of the PutS3AccessPolicy operation returned by the service.
- See Also:
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putS3AccessPolicy
default PutS3AccessPolicyResponse putS3AccessPolicy(Consumer<PutS3AccessPolicyRequest.Builder> putS3AccessPolicyRequest) throws NotSupportedOperationException, InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Adds an access policy to the specified store.
This is a convenience which creates an instance of the
PutS3AccessPolicyRequest.Builderavoiding the need to create one manually viaPutS3AccessPolicyRequest.builder()- Parameters:
putS3AccessPolicyRequest- AConsumerthat will call methods onPutS3AccessPolicyRequest.Builderto create a request.- Returns:
- Result of the PutS3AccessPolicy operation returned by the service.
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startAnnotationImportJob
default StartAnnotationImportJobResponse startAnnotationImportJob(StartAnnotationImportJobRequest startAnnotationImportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Starts an annotation import job.
- Parameters:
startAnnotationImportJobRequest-- Returns:
- Result of the StartAnnotationImportJob operation returned by the service.
- See Also:
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startAnnotationImportJob
default StartAnnotationImportJobResponse startAnnotationImportJob(Consumer<StartAnnotationImportJobRequest.Builder> startAnnotationImportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Starts an annotation import job.
This is a convenience which creates an instance of the
StartAnnotationImportJobRequest.Builderavoiding the need to create one manually viaStartAnnotationImportJobRequest.builder()- Parameters:
startAnnotationImportJobRequest- AConsumerthat will call methods onStartAnnotationImportJobRequest.Builderto create a request.- Returns:
- Result of the StartAnnotationImportJob operation returned by the service.
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startReadSetActivationJob
default StartReadSetActivationJobResponse startReadSetActivationJob(StartReadSetActivationJobRequest startReadSetActivationJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Activates an archived read set and returns its metadata in a JSON formatted output. AWS HealthOmics automatically archives unused read sets after 30 days. To monitor the status of your read set activation job, use the
GetReadSetActivationJoboperation.To learn more, see Activating read sets in the Amazon Web Services HealthOmics User Guide.
- Parameters:
startReadSetActivationJobRequest-- Returns:
- Result of the StartReadSetActivationJob operation returned by the service.
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startReadSetActivationJob
default StartReadSetActivationJobResponse startReadSetActivationJob(Consumer<StartReadSetActivationJobRequest.Builder> startReadSetActivationJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Activates an archived read set and returns its metadata in a JSON formatted output. AWS HealthOmics automatically archives unused read sets after 30 days. To monitor the status of your read set activation job, use the
GetReadSetActivationJoboperation.To learn more, see Activating read sets in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
StartReadSetActivationJobRequest.Builderavoiding the need to create one manually viaStartReadSetActivationJobRequest.builder()- Parameters:
startReadSetActivationJobRequest- AConsumerthat will call methods onStartReadSetActivationJobRequest.Builderto create a request.- Returns:
- Result of the StartReadSetActivationJob operation returned by the service.
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startReadSetExportJob
default StartReadSetExportJobResponse startReadSetExportJob(StartReadSetExportJobRequest startReadSetExportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Starts a read set export job. When the export job is finished, the read set is exported to an Amazon S3 bucket which can be retrieved using the
GetReadSetExportJobAPI operation.To monitor the status of the export job, use the
ListReadSetExportJobsAPI operation.- Parameters:
startReadSetExportJobRequest-- Returns:
- Result of the StartReadSetExportJob operation returned by the service.
- See Also:
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startReadSetExportJob
default StartReadSetExportJobResponse startReadSetExportJob(Consumer<StartReadSetExportJobRequest.Builder> startReadSetExportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Starts a read set export job. When the export job is finished, the read set is exported to an Amazon S3 bucket which can be retrieved using the
GetReadSetExportJobAPI operation.To monitor the status of the export job, use the
ListReadSetExportJobsAPI operation.
This is a convenience which creates an instance of the
StartReadSetExportJobRequest.Builderavoiding the need to create one manually viaStartReadSetExportJobRequest.builder()- Parameters:
startReadSetExportJobRequest- AConsumerthat will call methods onStartReadSetExportJobRequest.Builderto create a request.- Returns:
- Result of the StartReadSetExportJob operation returned by the service.
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startReadSetImportJob
default StartReadSetImportJobResponse startReadSetImportJob(StartReadSetImportJobRequest startReadSetImportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Imports a read set from the sequence store. Read set import jobs support a maximum of 100 read sets of different types. Monitor the progress of your read set import job by calling the
GetReadSetImportJobAPI operation.- Parameters:
startReadSetImportJobRequest-- Returns:
- Result of the StartReadSetImportJob operation returned by the service.
- See Also:
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startReadSetImportJob
default StartReadSetImportJobResponse startReadSetImportJob(Consumer<StartReadSetImportJobRequest.Builder> startReadSetImportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Imports a read set from the sequence store. Read set import jobs support a maximum of 100 read sets of different types. Monitor the progress of your read set import job by calling the
GetReadSetImportJobAPI operation.
This is a convenience which creates an instance of the
StartReadSetImportJobRequest.Builderavoiding the need to create one manually viaStartReadSetImportJobRequest.builder()- Parameters:
startReadSetImportJobRequest- AConsumerthat will call methods onStartReadSetImportJobRequest.Builderto create a request.- Returns:
- Result of the StartReadSetImportJob operation returned by the service.
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startReferenceImportJob
default StartReferenceImportJobResponse startReferenceImportJob(StartReferenceImportJobRequest startReferenceImportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Imports a reference genome from Amazon S3 into a specified reference store. You can have multiple reference genomes in a reference store. You can only import reference genomes one at a time into each reference store. Monitor the status of your reference import job by using the
GetReferenceImportJobAPI operation.- Parameters:
startReferenceImportJobRequest-- Returns:
- Result of the StartReferenceImportJob operation returned by the service.
- See Also:
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startReferenceImportJob
default StartReferenceImportJobResponse startReferenceImportJob(Consumer<StartReferenceImportJobRequest.Builder> startReferenceImportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Imports a reference genome from Amazon S3 into a specified reference store. You can have multiple reference genomes in a reference store. You can only import reference genomes one at a time into each reference store. Monitor the status of your reference import job by using the
GetReferenceImportJobAPI operation.
This is a convenience which creates an instance of the
StartReferenceImportJobRequest.Builderavoiding the need to create one manually viaStartReferenceImportJobRequest.builder()- Parameters:
startReferenceImportJobRequest- AConsumerthat will call methods onStartReferenceImportJobRequest.Builderto create a request.- Returns:
- Result of the StartReferenceImportJob operation returned by the service.
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startRun
default StartRunResponse startRun(StartRunRequest startRunRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Starts a new run and returns details about the run, or duplicates an existing run. A run is a single invocation of a workflow. If you provide request IDs, Amazon Web Services HealthOmics identifies duplicate requests and starts the run only once. Monitor the progress of the run by calling the
GetRunAPI operation.To start a new run, the following inputs are required:
-
A service role ARN (
roleArn). -
The run's workflow ID (
workflowId, not theuuidorrunId). -
An Amazon S3 location (
outputUri) where the run outputs will be saved. -
All required workflow parameters (
parameter), which can include optional parameters from the parameter template. The run cannot include any parameters that are not defined in the parameter template. To see all possible parameters, use theGetRunAPI operation. -
For runs with a
STATIC(default) storage type, specify the required storage capacity (in gibibytes). A storage capacity value is not required for runs that useDYNAMICstorage.
StartRuncan also duplicate an existing run using the run's default values. You can modify these default values and/or add other optional inputs. To duplicate a run, the following inputs are required:-
A service role ARN (
roleArn). -
The ID of the run to duplicate (
runId). -
An Amazon S3 location where the run outputs will be saved (
outputUri).
To learn more about the optional parameters for
StartRun, see Starting a run in the Amazon Web Services HealthOmics User Guide.Use the
retentionModeinput to control how long the metadata for each run is stored in CloudWatch. There are two retention modes:-
Specify
REMOVEto automatically remove the oldest runs when you reach the maximum service retention limit for runs. It is recommended that you use theREMOVEmode to initiate major run requests so that your runs do not fail when you reach the limit. -
The
retentionModeis set to theRETAINmode by default, which allows you to manually remove runs after reaching the maximum service retention limit. Under this setting, you cannot create additional runs until you remove the excess runs.
To learn more about the retention modes, see Run retention mode in the Amazon Web Services HealthOmics User Guide.
- Parameters:
startRunRequest-- Returns:
- Result of the StartRun operation returned by the service.
- See Also:
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startRun
default StartRunResponse startRun(Consumer<StartRunRequest.Builder> startRunRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Starts a new run and returns details about the run, or duplicates an existing run. A run is a single invocation of a workflow. If you provide request IDs, Amazon Web Services HealthOmics identifies duplicate requests and starts the run only once. Monitor the progress of the run by calling the
GetRunAPI operation.To start a new run, the following inputs are required:
-
A service role ARN (
roleArn). -
The run's workflow ID (
workflowId, not theuuidorrunId). -
An Amazon S3 location (
outputUri) where the run outputs will be saved. -
All required workflow parameters (
parameter), which can include optional parameters from the parameter template. The run cannot include any parameters that are not defined in the parameter template. To see all possible parameters, use theGetRunAPI operation. -
For runs with a
STATIC(default) storage type, specify the required storage capacity (in gibibytes). A storage capacity value is not required for runs that useDYNAMICstorage.
StartRuncan also duplicate an existing run using the run's default values. You can modify these default values and/or add other optional inputs. To duplicate a run, the following inputs are required:-
A service role ARN (
roleArn). -
The ID of the run to duplicate (
runId). -
An Amazon S3 location where the run outputs will be saved (
outputUri).
To learn more about the optional parameters for
StartRun, see Starting a run in the Amazon Web Services HealthOmics User Guide.Use the
retentionModeinput to control how long the metadata for each run is stored in CloudWatch. There are two retention modes:-
Specify
REMOVEto automatically remove the oldest runs when you reach the maximum service retention limit for runs. It is recommended that you use theREMOVEmode to initiate major run requests so that your runs do not fail when you reach the limit. -
The
retentionModeis set to theRETAINmode by default, which allows you to manually remove runs after reaching the maximum service retention limit. Under this setting, you cannot create additional runs until you remove the excess runs.
To learn more about the retention modes, see Run retention mode in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
StartRunRequest.Builderavoiding the need to create one manually viaStartRunRequest.builder()- Parameters:
startRunRequest- AConsumerthat will call methods onStartRunRequest.Builderto create a request.- Returns:
- Result of the StartRun operation returned by the service.
- See Also:
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startVariantImportJob
default StartVariantImportJobResponse startVariantImportJob(StartVariantImportJobRequest startVariantImportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Starts a variant import job.
- Parameters:
startVariantImportJobRequest-- Returns:
- Result of the StartVariantImportJob operation returned by the service.
- See Also:
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startVariantImportJob
default StartVariantImportJobResponse startVariantImportJob(Consumer<StartVariantImportJobRequest.Builder> startVariantImportJobRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Starts a variant import job.
This is a convenience which creates an instance of the
StartVariantImportJobRequest.Builderavoiding the need to create one manually viaStartVariantImportJobRequest.builder()- Parameters:
startVariantImportJobRequest- AConsumerthat will call methods onStartVariantImportJobRequest.Builderto create a request.- Returns:
- Result of the StartVariantImportJob operation returned by the service.
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tagResource
default TagResourceResponse tagResource(TagResourceRequest tagResourceRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Tags a resource.
- Parameters:
tagResourceRequest-- Returns:
- Result of the TagResource operation returned by the service.
- See Also:
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tagResource
default TagResourceResponse tagResource(Consumer<TagResourceRequest.Builder> tagResourceRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Tags a resource.
This is a convenience which creates an instance of the
TagResourceRequest.Builderavoiding the need to create one manually viaTagResourceRequest.builder()- Parameters:
tagResourceRequest- AConsumerthat will call methods onTagResourceRequest.Builderto create a request.- Returns:
- Result of the TagResource operation returned by the service.
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untagResource
default UntagResourceResponse untagResource(UntagResourceRequest untagResourceRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Removes tags from a resource.
- Parameters:
untagResourceRequest-- Returns:
- Result of the UntagResource operation returned by the service.
- See Also:
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untagResource
default UntagResourceResponse untagResource(Consumer<UntagResourceRequest.Builder> untagResourceRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Removes tags from a resource.
This is a convenience which creates an instance of the
UntagResourceRequest.Builderavoiding the need to create one manually viaUntagResourceRequest.builder()- Parameters:
untagResourceRequest- AConsumerthat will call methods onUntagResourceRequest.Builderto create a request.- Returns:
- Result of the UntagResource operation returned by the service.
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updateAnnotationStore
default UpdateAnnotationStoreResponse updateAnnotationStore(UpdateAnnotationStoreRequest updateAnnotationStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Updates an annotation store.
- Parameters:
updateAnnotationStoreRequest-- Returns:
- Result of the UpdateAnnotationStore operation returned by the service.
- See Also:
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updateAnnotationStore
default UpdateAnnotationStoreResponse updateAnnotationStore(Consumer<UpdateAnnotationStoreRequest.Builder> updateAnnotationStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Updates an annotation store.
This is a convenience which creates an instance of the
UpdateAnnotationStoreRequest.Builderavoiding the need to create one manually viaUpdateAnnotationStoreRequest.builder()- Parameters:
updateAnnotationStoreRequest- AConsumerthat will call methods onUpdateAnnotationStoreRequest.Builderto create a request.- Returns:
- Result of the UpdateAnnotationStore operation returned by the service.
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updateAnnotationStoreVersion
default UpdateAnnotationStoreVersionResponse updateAnnotationStoreVersion(UpdateAnnotationStoreVersionRequest updateAnnotationStoreVersionRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Updates the description of an annotation store version.
- Parameters:
updateAnnotationStoreVersionRequest-- Returns:
- Result of the UpdateAnnotationStoreVersion operation returned by the service.
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updateAnnotationStoreVersion
default UpdateAnnotationStoreVersionResponse updateAnnotationStoreVersion(Consumer<UpdateAnnotationStoreVersionRequest.Builder> updateAnnotationStoreVersionRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Updates the description of an annotation store version.
This is a convenience which creates an instance of the
UpdateAnnotationStoreVersionRequest.Builderavoiding the need to create one manually viaUpdateAnnotationStoreVersionRequest.builder()- Parameters:
updateAnnotationStoreVersionRequest- AConsumerthat will call methods onUpdateAnnotationStoreVersionRequest.Builderto create a request.- Returns:
- Result of the UpdateAnnotationStoreVersion operation returned by the service.
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updateRunCache
default UpdateRunCacheResponse updateRunCache(UpdateRunCacheRequest updateRunCacheRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Updates a run cache using its ID and returns a response with no body if the operation is successful. You can update the run cache description, name, or the default run cache behavior with
CACHE_ON_FAILUREorCACHE_ALWAYS. To confirm that your run cache settings have been properly updated, use theGetRunCacheAPI operation.For more information, see How call caching works in the Amazon Web Services HealthOmics User Guide.
- Parameters:
updateRunCacheRequest-- Returns:
- Result of the UpdateRunCache operation returned by the service.
- See Also:
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updateRunCache
default UpdateRunCacheResponse updateRunCache(Consumer<UpdateRunCacheRequest.Builder> updateRunCacheRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Updates a run cache using its ID and returns a response with no body if the operation is successful. You can update the run cache description, name, or the default run cache behavior with
CACHE_ON_FAILUREorCACHE_ALWAYS. To confirm that your run cache settings have been properly updated, use theGetRunCacheAPI operation.For more information, see How call caching works in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
UpdateRunCacheRequest.Builderavoiding the need to create one manually viaUpdateRunCacheRequest.builder()- Parameters:
updateRunCacheRequest- AConsumerthat will call methods onUpdateRunCacheRequest.Builderto create a request.- Returns:
- Result of the UpdateRunCache operation returned by the service.
- See Also:
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updateRunGroup
default UpdateRunGroupResponse updateRunGroup(UpdateRunGroupRequest updateRunGroupRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Updates the settings of a run group and returns a response with no body if the operation is successful.
You can update the following settings with
UpdateRunGroup:-
Maximum number of CPUs
-
Run time (measured in minutes)
-
Number of GPUs
-
Number of concurrent runs
-
Group name
To confirm that the settings have been successfully updated, use the
ListRunGroupsorGetRunGroupAPI operations to verify that the desired changes have been made.- Parameters:
updateRunGroupRequest-- Returns:
- Result of the UpdateRunGroup operation returned by the service.
- See Also:
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updateRunGroup
default UpdateRunGroupResponse updateRunGroup(Consumer<UpdateRunGroupRequest.Builder> updateRunGroupRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Updates the settings of a run group and returns a response with no body if the operation is successful.
You can update the following settings with
UpdateRunGroup:-
Maximum number of CPUs
-
Run time (measured in minutes)
-
Number of GPUs
-
Number of concurrent runs
-
Group name
To confirm that the settings have been successfully updated, use the
ListRunGroupsorGetRunGroupAPI operations to verify that the desired changes have been made.
This is a convenience which creates an instance of the
UpdateRunGroupRequest.Builderavoiding the need to create one manually viaUpdateRunGroupRequest.builder()- Parameters:
updateRunGroupRequest- AConsumerthat will call methods onUpdateRunGroupRequest.Builderto create a request.- Returns:
- Result of the UpdateRunGroup operation returned by the service.
- See Also:
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updateSequenceStore
default UpdateSequenceStoreResponse updateSequenceStore(UpdateSequenceStoreRequest updateSequenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Update one or more parameters for the sequence store.
- Parameters:
updateSequenceStoreRequest-- Returns:
- Result of the UpdateSequenceStore operation returned by the service.
- See Also:
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updateSequenceStore
default UpdateSequenceStoreResponse updateSequenceStore(Consumer<UpdateSequenceStoreRequest.Builder> updateSequenceStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Update one or more parameters for the sequence store.
This is a convenience which creates an instance of the
UpdateSequenceStoreRequest.Builderavoiding the need to create one manually viaUpdateSequenceStoreRequest.builder()- Parameters:
updateSequenceStoreRequest- AConsumerthat will call methods onUpdateSequenceStoreRequest.Builderto create a request.- Returns:
- Result of the UpdateSequenceStore operation returned by the service.
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updateVariantStore
default UpdateVariantStoreResponse updateVariantStore(UpdateVariantStoreRequest updateVariantStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Updates a variant store.
- Parameters:
updateVariantStoreRequest-- Returns:
- Result of the UpdateVariantStore operation returned by the service.
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updateVariantStore
default UpdateVariantStoreResponse updateVariantStore(Consumer<UpdateVariantStoreRequest.Builder> updateVariantStoreRequest) throws InternalServerException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, AwsServiceException, SdkClientException, OmicsException Updates a variant store.
This is a convenience which creates an instance of the
UpdateVariantStoreRequest.Builderavoiding the need to create one manually viaUpdateVariantStoreRequest.builder()- Parameters:
updateVariantStoreRequest- AConsumerthat will call methods onUpdateVariantStoreRequest.Builderto create a request.- Returns:
- Result of the UpdateVariantStore operation returned by the service.
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updateWorkflow
default UpdateWorkflowResponse updateWorkflow(UpdateWorkflowRequest updateWorkflowRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Updates information about a workflow.
You can update the following workflow information:
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Name
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Description
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Default storage type
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Default storage capacity (with workflow ID)
This operation returns a response with no body if the operation is successful. You can check the workflow updates by calling the
GetWorkflowAPI operation.For more information, see Update a private workflow in the Amazon Web Services HealthOmics User Guide.
- Parameters:
updateWorkflowRequest-- Returns:
- Result of the UpdateWorkflow operation returned by the service.
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updateWorkflow
default UpdateWorkflowResponse updateWorkflow(Consumer<UpdateWorkflowRequest.Builder> updateWorkflowRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Updates information about a workflow.
You can update the following workflow information:
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Name
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Description
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Default storage type
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Default storage capacity (with workflow ID)
This operation returns a response with no body if the operation is successful. You can check the workflow updates by calling the
GetWorkflowAPI operation.For more information, see Update a private workflow in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
UpdateWorkflowRequest.Builderavoiding the need to create one manually viaUpdateWorkflowRequest.builder()- Parameters:
updateWorkflowRequest- AConsumerthat will call methods onUpdateWorkflowRequest.Builderto create a request.- Returns:
- Result of the UpdateWorkflow operation returned by the service.
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updateWorkflowVersion
default UpdateWorkflowVersionResponse updateWorkflowVersion(UpdateWorkflowVersionRequest updateWorkflowVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Updates information about the workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
- Parameters:
updateWorkflowVersionRequest-- Returns:
- Result of the UpdateWorkflowVersion operation returned by the service.
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updateWorkflowVersion
default UpdateWorkflowVersionResponse updateWorkflowVersion(Consumer<UpdateWorkflowVersionRequest.Builder> updateWorkflowVersionRequest) throws InternalServerException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ConflictException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Updates information about the workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
UpdateWorkflowVersionRequest.Builderavoiding the need to create one manually viaUpdateWorkflowVersionRequest.builder()- Parameters:
updateWorkflowVersionRequest- AConsumerthat will call methods onUpdateWorkflowVersionRequest.Builderto create a request.- Returns:
- Result of the UpdateWorkflowVersion operation returned by the service.
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uploadReadSetPart
default UploadReadSetPartResponse uploadReadSetPart(UploadReadSetPartRequest uploadReadSetPartRequest, RequestBody requestBody) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Uploads a specific part of a read set into a sequence store. When you a upload a read set part with a part number that already exists, the new part replaces the existing one. This operation returns a JSON formatted response containing a string identifier that is used to confirm that parts are being added to the intended upload.
For more information, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
uploadReadSetPartRequest-requestBody- The content to send to the service. ARequestBodycan be created using one of several factory methods for various sources of data. For example, to create a request body from a file you can do the following.
See documentation inRequestBody.fromFile(new File("myfile.txt"))RequestBodyfor additional details and which sources of data are supported. The service documentation for the request content is as follows 'The read set data to upload for a part.
'- Returns:
- Result of the UploadReadSetPart operation returned by the service.
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uploadReadSetPart
default UploadReadSetPartResponse uploadReadSetPart(Consumer<UploadReadSetPartRequest.Builder> uploadReadSetPartRequest, RequestBody requestBody) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Uploads a specific part of a read set into a sequence store. When you a upload a read set part with a part number that already exists, the new part replaces the existing one. This operation returns a JSON formatted response containing a string identifier that is used to confirm that parts are being added to the intended upload.
For more information, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
UploadReadSetPartRequest.Builderavoiding the need to create one manually viaUploadReadSetPartRequest.builder()- Parameters:
uploadReadSetPartRequest- AConsumerthat will call methods onUploadReadSetPartRequest.Builderto create a request.requestBody- The content to send to the service. ARequestBodycan be created using one of several factory methods for various sources of data. For example, to create a request body from a file you can do the following.
See documentation inRequestBody.fromFile(new File("myfile.txt"))RequestBodyfor additional details and which sources of data are supported. The service documentation for the request content is as follows 'The read set data to upload for a part.
'- Returns:
- Result of the UploadReadSetPart operation returned by the service.
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uploadReadSetPart
default UploadReadSetPartResponse uploadReadSetPart(UploadReadSetPartRequest uploadReadSetPartRequest, Path sourcePath) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Uploads a specific part of a read set into a sequence store. When you a upload a read set part with a part number that already exists, the new part replaces the existing one. This operation returns a JSON formatted response containing a string identifier that is used to confirm that parts are being added to the intended upload.
For more information, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.
- Parameters:
uploadReadSetPartRequest-sourcePath-Pathto file containing data to send to the service. File will be read entirely and may be read multiple times in the event of a retry. If the file does not exist or the current user does not have access to read it then an exception will be thrown. The service documentation for the request content is as follows 'The read set data to upload for a part.
'- Returns:
- Result of the UploadReadSetPart operation returned by the service.
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uploadReadSetPart
default UploadReadSetPartResponse uploadReadSetPart(Consumer<UploadReadSetPartRequest.Builder> uploadReadSetPartRequest, Path sourcePath) throws InternalServerException, NotSupportedOperationException, ServiceQuotaExceededException, ThrottlingException, ValidationException, ResourceNotFoundException, AccessDeniedException, RequestTimeoutException, AwsServiceException, SdkClientException, OmicsException Uploads a specific part of a read set into a sequence store. When you a upload a read set part with a part number that already exists, the new part replaces the existing one. This operation returns a JSON formatted response containing a string identifier that is used to confirm that parts are being added to the intended upload.
For more information, see Direct upload to a sequence store in the Amazon Web Services HealthOmics User Guide.
This is a convenience which creates an instance of the
UploadReadSetPartRequest.Builderavoiding the need to create one manually viaUploadReadSetPartRequest.builder()- Parameters:
uploadReadSetPartRequest- AConsumerthat will call methods onUploadReadSetPartRequest.Builderto create a request.sourcePath-Pathto file containing data to send to the service. File will be read entirely and may be read multiple times in the event of a retry. If the file does not exist or the current user does not have access to read it then an exception will be thrown. The service documentation for the request content is as follows 'The read set data to upload for a part.
'- Returns:
- Result of the UploadReadSetPart operation returned by the service.
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waiter
Create an instance ofOmicsWaiterusing this client.Waiters created via this method are managed by the SDK and resources will be released when the service client is closed.
- Returns:
- an instance of
OmicsWaiter
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create
Create aOmicsClientwith the region loaded from theDefaultAwsRegionProviderChainand credentials loaded from theDefaultCredentialsProvider. -
builder
Create a builder that can be used to configure and create aOmicsClient. -
serviceMetadata
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serviceClientConfiguration
Description copied from interface:SdkClientThe SDK service client configuration exposes client settings to the user, e.g., ClientOverrideConfiguration- Specified by:
serviceClientConfigurationin interfaceAwsClient- Specified by:
serviceClientConfigurationin interfaceSdkClient- Returns:
- SdkServiceClientConfiguration
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