Package-level declarations
Types
Amazon Web Services HealthOmics is a service that helps users such as bioinformaticians, researchers, and scientists to store, query, analyze, and generate insights from genomics and other biological data. It simplifies and accelerates the process of storing and analyzing genomic information for Amazon Web Services.
Inherited functions
Stops a multipart upload.
Accept a resource share request.
Deletes one or more read sets.
Cancels an annotation import job.
Cancels a run using its ID and returns a response with no body if the operation is successful. To confirm that the run has been cancelled, use the ListRuns API operation to check that it is no longer listed.
Cancels a variant import job.
Concludes a multipart upload once you have uploaded all the components.
Creates an annotation store.
Creates a new version of an annotation store.
Begins a multipart read set upload.
Creates a reference store.
Creates a run cache to store and reference task outputs from completed private runs. Specify an Amazon S3 location where Amazon Web Services HealthOmics saves the cached data. This data must be immediately accessible and not in an archived state. You can save intermediate task files to a run cache if they are declared as task outputs in the workflow definition file.
Creates a run group to limit the compute resources for the runs that are added to the group. Returns an ARN, ID, and tags for the run group.
Creates a sequence store.
Creates a cross-account shared resource. The resource owner makes an offer to share the resource with the principal subscriber (an AWS user with a different account than the resource owner).
Creates a variant store.
Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:
Creates a new workflow version for the workflow that you specify with the workflowId parameter.
Deletes an annotation store.
Deletes one or multiple versions of an annotation store.
Deletes a genome reference.
Deletes a genome reference store.
Deletes a run and returns a response with no body if the operation is successful. You can only delete a run that has reached a COMPLETED, FAILED, or CANCELLED stage. A completed run has delivered an output, or was cancelled and resulted in no output. When you delete a run, only the metadata associated with the run is deleted. The run outputs remain in Amazon S3 and logs remain in CloudWatch.
Deletes a run cache and returns a response with no body if the operation is successful. This action removes the cache metadata stored in the service account, but does not delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3 Delete operations.
Deletes a run group and returns a response with no body if the operation is successful.
Deletes an access policy for the specified store.
Deletes a sequence store.
Deletes a resource share. If you are the resource owner, the subscriber will no longer have access to the shared resource. If you are the subscriber, this operation deletes your access to the share.
Deletes a variant store.
Deletes a workflow by specifying its ID. No response is returned if the deletion is successful.
Deletes a workflow version. Deleting a workflow version doesn't affect any ongoing runs that are using the workflow version.
Gets information about an annotation import job.
Gets information about an annotation store.
Retrieves the metadata for an annotation store version.
Gets information about a read set activation job.
Gets information about a read set export job.
Gets information about a read set import job.
Gets details about a read set.
Gets information about a reference import job.
Gets information about a genome reference's metadata.
Gets information about a reference store.
Gets detailed information about a specific run using its ID.
Retrieves detailed information about the specified run cache using its ID.
Gets information about a run group and returns its metadata.
Gets detailed information about a run task using its ID.
Retrieves details about an access policy on a given store.
Gets information about a sequence store.
Retrieves the metadata for the specified resource share.
Gets information about a variant import job.
Gets information about a variant store.
Gets all information about a workflow using its ID.
Gets information about a workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
Retrieves a list of annotation import jobs.
Retrieves a list of annotation stores.
Lists the versions of an annotation store.
Lists multipart read set uploads and for in progress uploads. Once the upload is completed, a read set is created and the upload will no longer be returned in the response.
Retrieves a list of read set activation jobs.
Retrieves a list of read set export jobs.
Retrieves a list of read set import jobs.
Retrieves a list of read sets.
This operation will list all parts in a requested multipart upload for a sequence store.
Retrieves a list of reference import jobs.
Retrieves a list of references.
Retrieves a list of reference stores.
Retrieves a list of your run caches and the metadata for each cache.
Retrieves a list of all run groups and returns the metadata for each run group.
Retrieves a list of runs and returns each run's metadata and status.
Returns a list of tasks and status information within their specified run. Use this operation to monitor runs and to identify which specific tasks have failed.
Retrieves a list of sequence stores.
Retrieves the resource shares associated with an account. Use the filter parameter to retrieve a specific subset of the shares.
Retrieves a list of tags for a resource.
Retrieves a list of variant import jobs.
Retrieves a list of variant stores.
Retrieves a list of existing workflows. You can filter for specific workflows by their name and type. Using the type parameter, specify PRIVATE to retrieve a list of private workflows or specify READY2RUN for a list of all Ready2Run workflows. If you do not specify the type of workflow, this operation returns a list of existing workflows.
Lists the workflow versions for the specified workflow. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
Adds an access policy to the specified store.
Starts an annotation import job.
Activates an archived read set. To reduce storage charges, Amazon Omics archives unused read sets after 30 days.
Exports a read set to Amazon S3.
Starts a read set import job.
Starts a reference import job.
Starts a new run and returns details about the run, or duplicates an existing run. A run is a single invocation of a workflow. If you provide request IDs, Amazon Web Services HealthOmics identifies duplicate requests and starts the run only once. Monitor the progress of the run by calling the GetRun API operation.
Starts a variant import job.
Tags a resource.
Removes tags from a resource.
Updates an annotation store.
Updates the description of an annotation store version.
Updates a run cache using its ID and returns a response with no body if the operation is successful. You can update the run cache description, name, or the default run cache behavior with CACHE_ON_FAILURE or CACHE_ALWAYS. To confirm that your run cache settings have been properly updated, use the GetRunCache API operation.
Updates the settings of a run group and returns a response with no body if the operation is successful.
Update one or more parameters for the sequence store.
Updates a variant store.
Updates information about a workflow.
Updates information about the workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This operation uploads a specific part of a read set. If you upload a new part using a previously used part number, the previously uploaded part will be overwritten.
Create a copy of the client with one or more configuration values overridden. This method allows the caller to perform scoped config overrides for one or more client operations.